Table 3

Number (%) of GLEAN transcripts and exons with overlap to gene prediction sets


Drosophila Ortholog
Ensembl
Evolutionary Conserved Core
Fgenesh
NCBI

Transcript 80% overlap
5,532 (55)
8,806 (84)
7,789 (81)
9,873 (98)
8,770 (93)
Transcript 80% both overlap
2,559 (256)
4,032 (40)
4,776 (47)
6,323 (62)
7,117 (70)
Transcript exact overlap
232 (2)
706 (7)
1,451 (14)
3,595 (35)
3,757 (37)
Exon 80% overlap
26,290 (41)
46,424 (72)
48,902 (75)
61,053 (94)
61,890 (95)
Exon 80% both overlap
22,566 (35)
37,805 (58)
43,023 (66)
56,442 (87)
57,128 (88)
Exon exact overlap
16,621 (26)
26,440 (41)
38,040 (59)
51,618 (79)
53,435 (82)

Elsik et al. Genome Biology 2007 8:R13   doi:10.1186/gb-2007-8-1-r13