Table 3

Number (%) of GLEAN transcripts and exons with overlap to gene prediction sets

Drosophila Ortholog

Ensembl

Evolutionary Conserved Core

Fgenesh

NCBI

Transcript 80% overlap

5,532 (55)

8,806 (84)

7,789 (81)

9,873 (98)

8,770 (93)

Transcript 80% both overlap

2,559 (256)

4,032 (40)

4,776 (47)

6,323 (62)

7,117 (70)

Transcript exact overlap

232 (2)

706 (7)

1,451 (14)

3,595 (35)

3,757 (37)

Exon 80% overlap

26,290 (41)

46,424 (72)

48,902 (75)

61,053 (94)

61,890 (95)

Exon 80% both overlap

22,566 (35)

37,805 (58)

43,023 (66)

56,442 (87)

57,128 (88)

Exon exact overlap

16,621 (26)

26,440 (41)

38,040 (59)

51,618 (79)

53,435 (82)

Elsik et al. Genome Biology 2007 8:R13   doi:10.1186/gb-2007-8-1-r13