Table 7

Comparison of gene prediction sets with spliced EST alignments

GLEAN

Drosophila Ortholog

Ensembl

Evolutionary Conserved Core

Fgenesh

NCBI


Unique predicted donor/acceptor sites

54,818

21,254

101,054

49,587

80,889

61,107

Internal EST donor/acceptor sites

3,255

1,467

3,157

2,504

3,227

3,233

Perfect matches to EST donor/acceptor site

2,985

1,354

2,861

2,094

2,812

2,857

Perfect matches per internal EST donor/acceptor site

0.92

0.92

0.91

0.84

0.87

0.88

Perfect matches per predicted donor/acceptor site

0.059

0.069

0.031

0.042

0.035

0.047

Donor match

3,083

1,369

2,909

2,230

3,071

3,008

Acceptor match

3,063

1,392

2,932

2,219

3,030

2,940


'Predicted donor/acceptor sites' are splice sites within predicted gene models. 'Internal EST donor/acceptor sites' are EST splice sites located between start and termination codons of predicted genes. EST, expressed sequence tag.

Elsik et al. Genome Biology 2007 8:R13   doi:10.1186/gb-2007-8-1-r13

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