|
Comparison of gene prediction sets with spliced EST alignments |
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| GLEAN |
Drosophila Ortholog |
Ensembl |
Evolutionary Conserved Core |
Fgenesh |
NCBI |
|
|
|
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| Unique predicted donor/acceptor sites |
54,818 |
21,254 |
101,054 |
49,587 |
80,889 |
61,107 |
| Internal EST donor/acceptor sites |
3,255 |
1,467 |
3,157 |
2,504 |
3,227 |
3,233 |
| Perfect matches to EST donor/acceptor site |
2,985 |
1,354 |
2,861 |
2,094 |
2,812 |
2,857 |
| Perfect matches per internal EST donor/acceptor site |
0.92 |
0.92 |
0.91 |
0.84 |
0.87 |
0.88 |
| Perfect matches per predicted donor/acceptor site |
0.059 |
0.069 |
0.031 |
0.042 |
0.035 |
0.047 |
| Donor match |
3,083 |
1,369 |
2,909 |
2,230 |
3,071 |
3,008 |
| Acceptor match |
3,063 |
1,392 |
2,932 |
2,219 |
3,030 |
2,940 |
|
'Predicted donor/acceptor sites' are splice sites within predicted gene models. 'Internal EST donor/acceptor sites' are EST splice sites located between start and termination codons of predicted genes. EST, expressed sequence tag. | ||||||
Elsik et al. Genome Biology 2007 8:R13 doi:10.1186/gb-2007-8-1-r13 |
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