GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
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* Corresponding author: Alberto Pascual-Montano pascual@fis.ucm.es
Genome Biology 2007, 8:R3 doi:10.1186/gb-2007-8-1-r3
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BioMed Central: 12 citations
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Research article
Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation Moumita Datta, Ananyo Choudhury, Ansuman Lahiri, Nitai P Bhattacharyya BMC Genomics 2011, 12:463 (26 September 2011) |
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Research article
Torsten Günther, Karl J Schmid BMC Research Notes 2011, 4:232 (5 July 2011) |
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Research
Esther Castellano, Carmen Guerrero, Alejandro Núñez, Javier De Las Rivas, Eugenio Santos Genome Biology 2009, 10:R123 (6 November 2009) Transcriptional and functional analysis reveals that the H-Ras and N-Ras isoforms have different roles in the initial phases of the mouse cell cycle |
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Research article
Pierre R Bushel, Nicholas A Heard, Roee Gutman, Liwen Liu, Shyamal D Peddada, Saumyadipta Pyne BMC Systems Biology 2009, 3:93 (16 September 2009) |
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Research article
Effect of CAR activation on selected metabolic pathways in normal and hyperlipidemic mouse livers Tadeja Režen, Viola Tamasi, Anita Lövgren-Sandblom, Ingemar Björkhem, Urs A Meyer, Damjana Rozman BMC Genomics 2009, 10:384 (19 August 2009) |
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Research article
Blanca M Herrera, Helen E Lockstone, Jennifer M Taylor, Quin F Wills, Pamela J Kaisaki, Amy Barrett, Carme Camps, Christina Fernandez, Jiannis Ragoussis, Dominique Gauguier, Mark I McCarthy, Cecilia M Lindgren BMC Medical Genomics 2009, 2:54 (18 August 2009) Combining global microRNA and mRNA expression data indicates MiR-125a is over-expressed in the liver of hyperglycaemic rats and is a putative modulator of glucose and lipid metabolism in a rat model of type 2 diabetes.
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Method
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network Alexey V Antonov, Sabine Dietmann, Hans W Mewes Genome Biology 2008, 9:R179 (18 December 2008) A web-based tool for interpretation of experimentally-derived gene lists that provides global models uniting genes from different metabolic pathways. |
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Methodology article
Assessment of protein set coherence using functional annotations Monica Chagoyen, Jose M Carazo, Alberto Pascual-Montano BMC Bioinformatics 2008, 9:444 (20 October 2008) A novel approach to evaluating the homogeneity of protein sets on the basis of the global similarity of their Gene Ontology functional annotations compliments methods for validating microarray clusters and protein-protein interaction networks.
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Methodology article
Roland Barriot, David J Sherman, Isabelle Dutour BMC Bioinformatics 2007, 8:332 (11 September 2007) |
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Software
Da Huang, Brad T Sherman, Qina Tan, Jack R Collins, W Gregory Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki Genome Biology 2007, 8:R183 (4 September 2007) The DAVID gene functional classification tool uses a novel fuzzy clustering algorithm to condense a list of genes or associated biological terms into organized classes of related genes or biology, called biological modules. |
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Database
Xin Zhou, Zhen Su BMC Genomics 2007, 8:246 (24 July 2007) |
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Research
Integrative analysis of a cancer somatic mutome Pilar Hernández, Xavier Solé, Joan Valls, Víctor Moreno, Gabriel Capellá, Ander Urruticoechea, Miguel Pujana Molecular Cancer 2007, 6:13 (5 February 2007) |