Genome Biology

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Clustering of genes into regulons using integrated modeling-COGRIM

Guang Chen1,2, Shane T Jensen3 and Christian J Stoeckert2,4*

Author Affiliations

1 Department of Bioengineering, University of Pennsylvania, 240 Skirkanich Hall, 3320 Smith Walk, Philadelphia, Pennsylvania 19104, USA

2 Center for Bioinformatics, University of Pennsylvania,1420 Blockley Hall, 423 Guardian Drive, Philadelphia, Pennsylvania 19104, USA

3 Department of Statistics, The Wharton School, University of Pennsylvania, 463 Jon M. Huntsman Hall, 3730 Walnut Street, Philadelphia, Pennsylvania 19104, USA

4 Department of Genetics, School of Medicine, University of Pennsylvania, 415 Curie Boulevard, Philadelphia, Pennsylvania 19104, USA

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Genome Biology 2007, 8:R4 doi:10.1186/gb-2007-8-1-r4

Published: 4 January 2007

Additional files

Additional data file 1:

Detailed model procedures, Gibbs sampling algorithm, data processing procedures, predicted gene targets, and annotation evidence.

Format: PDF Size: 1.3MB Download file

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Open Data

Additional data file 2:

COGRIM R program.

Format: R Size: 7KB Download file

Open Data