Table 1 |
||||
|
Gene classification from ChIP binding data and expression data |
||||
| TF |
B+ |
B- |
||
|
|
||||
| B+/C- |
B+/C+ |
B-/C+ |
B-/C- |
|
|
|
||||
| ACE2 |
46 |
22 |
9 |
5964 |
| SWI4 |
25 |
99 |
36 |
5881 |
| SWI5 |
54 |
40 |
22 |
5925 |
| SWI6 |
54 |
39 |
48 |
5900 |
| MBP1 |
48 |
56 |
29 |
5908 |
| STB1 |
6 |
17 |
15 |
6003 |
| SKN7 |
49 |
46 |
26 |
5920 |
| FKH1 |
36 |
26 |
45 |
5934 |
| FKH2 |
59 |
46 |
48 |
5888 |
| NDD1 |
19 |
74 |
10 |
5938 |
| MCM1 |
44 |
42 |
31 |
5924 |
| ABF1 |
99 |
175 |
128 |
5639 |
| BAS1 |
34 |
8 |
17 |
5982 |
| CAD1 |
28 |
10 |
10 |
5993 |
| CBF1 |
24 |
19 |
28 |
5970 |
| GAL4 |
12 |
28 |
3 |
5998 |
| GCN4 |
26 |
53 |
11 |
5951 |
| GCR1 |
6 |
6 |
10 |
6019 |
| GCR2 |
23 |
8 |
15 |
5995 |
| HAP2 |
4 |
14 |
23 |
6000 |
| HAP3 |
11 |
11 |
16 |
6003 |
| HAP4 |
33 |
34 |
17 |
5957 |
| HSF1 |
34 |
18 |
55 |
5934 |
| INO2 |
5 |
6 |
14 |
6016 |
| LEU3 |
15 |
6 |
22 |
5998 |
| MET31 |
21 |
6 |
31 |
5983 |
| MSN4 |
24 |
6 |
13 |
5998 |
| PDR1 |
22 |
44 |
19 |
5956 |
| PHO4 |
36 |
23 |
19 |
5963 |
| PUT3 |
3 |
6 |
0 |
6032 |
| RAP1 |
113 |
87 |
64 |
5777 |
| RCS1 |
16 |
15 |
19 |
5991 |
| REB1 |
67 |
72 |
59 |
5843 |
| RLM1 |
23 |
14 |
12 |
5992 |
| RME1 |
13 |
3 |
15 |
6010 |
| ROX1 |
20 |
9 |
20 |
5992 |
| SMP1 |
24 |
39 |
16 |
5962 |
| STE12 |
33 |
17 |
28 |
5963 |
| YAP1 |
27 |
17 |
21 |
5976 |
|
|
||||
|
A total of 6041 ORFs are considered, based on availability of expression data and binding data, and 1542 target genes are selected in C+ (B+/C+ and B-/C+) by applying a posterior probability cutoff of 0.5 on each Cij (see COGRIM website [32] for the lists of gene ORFs for each TF). ORF, open reading frame; TF, transcription factor. |
||||
|
Chen et al. Genome Biology 2007 8:R4 doi:10.1186/gb-2007-8-1-r4 |
||||
