Research
Update of the Anopheles gambiae PEST genome assembly
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* Corresponding author: Frank H Collins frank@nd.edu
1 Center for Global Health and Infectious Diseases, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN 46556-0369, USA
2 Department of Entomology, College of Agriculture and Life Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0319, USA
3 European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
4 Department of Biology, University of Texas at Arlington, Arlington, TX 76019, USA
5 School of Medicine - IDP - Biomedical Informatics, Stanford University, Stanford, CA 94305, USA
Genome Biology 2007, 8:R5 doi:10.1186/gb-2007-8-1-r5
Published: 8 January 2007Additional files
Additional data file 1:
Scaffold AAAB01008882 was not included in the final 2L chromosome assembly because of concerns about possible mis-assembly of part of the scaffold.
Format: XLS Size: 9KB Download file
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Additional data file 2:
Scaffolds mapped to the Y chromosome.
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Additional data file 3:
BAC clones that span gaps between scaffolds.
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Additional data file 4:
Scaffolds representing alternative assemblies.
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Additional data file 5:
Chr: the chromosome that the scaffolds are mapped to. Alt_Scaffold: the scaffold with sequence overlap considered to be an alternative assembly to the golden path. Chr_Scaffold: the scaffold with sequence overlap used for the golden path. as_start: start of the overlap on the scaffold with the alternative assembly segment (Alt_Scaffold). as_end: end of the overlap on the Alt_Scaffold. cs_start: start of the overlap on the scaffold where the overlap segment is used for the golden path (Chr_Scaffold). cs_end: end of the overlap on the Chr_Scaffold. Chr_Start: start of the overlap region, in chromosomal coordinates. Chr_End: end of the overlap region, in chromosomal coordinates. as_to_cs: orientation of the Alt_Scaffold with respect to the Chr_Scaffold. as_to_chr: orientation of the Alt_Scaffold with respect to the chromosome.
Format: XLS Size: 12KB Download file
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Additional data file 6:
Bacterial specific scaffolds.
Format: DOC Size: 27KB Download file
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