Open Access Research

Update of the Anopheles gambiae PEST genome assembly

Maria V Sharakhova12, Martin P Hammond3, Neil F Lobo1, Jaroslaw Krzywinski14, Maria F Unger1, Maureen E Hillenmeyer15, Robert V Bruggner1, Ewan Birney2 and Frank H Collins1*

Author Affiliations

1 Center for Global Health and Infectious Diseases, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN 46556-0369, USA

2 Department of Entomology, College of Agriculture and Life Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0319, USA

3 European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK

4 Department of Biology, University of Texas at Arlington, Arlington, TX 76019, USA

5 School of Medicine - IDP - Biomedical Informatics, Stanford University, Stanford, CA 94305, USA

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Genome Biology 2007, 8:R5  doi:10.1186/gb-2007-8-1-r5

Published: 8 January 2007

Additional files

Additional data file 1:

Scaffold AAAB01008882 was not included in the final 2L chromosome assembly because of concerns about possible mis-assembly of part of the scaffold.

Format: XLS Size: 9KB Download file

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Open Data

Additional data file 2:

Scaffolds mapped to the Y chromosome.

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Additional data file 3:

BAC clones that span gaps between scaffolds.

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Additional data file 4:

Scaffolds representing alternative assemblies.

Format: XLS Size: 14KB Download file

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Additional data file 5:

Chr: the chromosome that the scaffolds are mapped to. Alt_Scaffold: the scaffold with sequence overlap considered to be an alternative assembly to the golden path. Chr_Scaffold: the scaffold with sequence overlap used for the golden path. as_start: start of the overlap on the scaffold with the alternative assembly segment (Alt_Scaffold). as_end: end of the overlap on the Alt_Scaffold. cs_start: start of the overlap on the scaffold where the overlap segment is used for the golden path (Chr_Scaffold). cs_end: end of the overlap on the Chr_Scaffold. Chr_Start: start of the overlap region, in chromosomal coordinates. Chr_End: end of the overlap region, in chromosomal coordinates. as_to_cs: orientation of the Alt_Scaffold with respect to the Chr_Scaffold. as_to_chr: orientation of the Alt_Scaffold with respect to the chromosome.

Format: XLS Size: 12KB Download file

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Open Data

Additional data file 6:

Bacterial specific scaffolds.

Format: DOC Size: 27KB Download file

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Open Data