Additional data file 5.

Chr: the chromosome that the scaffolds are mapped to. Alt_Scaffold: the scaffold with sequence overlap considered to be an alternative assembly to the golden path. Chr_Scaffold: the scaffold with sequence overlap used for the golden path. as_start: start of the overlap on the scaffold with the alternative assembly segment (Alt_Scaffold). as_end: end of the overlap on the Alt_Scaffold. cs_start: start of the overlap on the scaffold where the overlap segment is used for the golden path (Chr_Scaffold). cs_end: end of the overlap on the Chr_Scaffold. Chr_Start: start of the overlap region, in chromosomal coordinates. Chr_End: end of the overlap region, in chromosomal coordinates. as_to_cs: orientation of the Alt_Scaffold with respect to the Chr_Scaffold. as_to_chr: orientation of the Alt_Scaffold with respect to the chromosome.

Format: XLS Size: 12KB Download file

This file can be viewed with: Microsoft Excel Viewer

Sharakhova et al. Genome Biology 2007 8:R5   doi:10.1186/gb-2007-8-1-r5