Table 1

Scaffolds from the current Anopheles gambiae genome golden path

No.

Scaffold accession number

Full length of scaffold*

Scaffold begin

Scaffold end

Assembly status to the next scaffold

BAC clones crossing gap between current and next scaffold

X chromosome

Telomere end

1

AAAB01008846

11308833

4C

1D

Not joined

2

AAAB01008847

3715079

1D

5A

Not joined

3

AAAB01008963

2230633

5A

5C

Not joined

4

AAAB01008811

3062431

5C

6

Not joined

5

AAAB01008973

600295

6

6

Not joined

6

AAAB01008958

589940

6

6

Not joined

7

AAAB01008852

409660

6

6

Not joined

8

AAAB01008975

935344

6

6

Not joined

9

AAAB01008885

267815

6

6

Not joined

10

AAAB01008967

438965

6

6

Not joined

11

AAAB01007622

14705

6

6

Not joined

12

AAAB01008976

589797

6

6

Not joined

13

AAAB01008861

109611

6

6

Not joined

X chromosome

Centromere end

2R chromosome

Telomere end

14

AAAB01008987

16222597

10D

7A

Bridged

17O20

15

AAAB01008799

2774677

11B

10D

Not joined

16

AAAB01008859

12516315

13E

11B

Bridged

122O11

17

AAAB01008879

2921310

14A

14C

Joined

18

AAAB01008794

932688

14D

14D

Joined

19

AAAB01008982

1015562

14D

14E

Joined and bridged

155O10

20

AAAB01008904

1759265

14E

15B

Joined

21

AAAB01008851

2082253

15C

15C

Joined and bridged

179J17

22

AAAB01008820

590116

15D

15C

Joined and bridged

30L16

23

AAAB01008888

3396474

15D

16A

Not joined

24

AAAB01008844

2866027

16B

16D

Joined and bridged

21H06

25

AAAB01008805

646796

16D

16D

Not joined

26

AAAB01008862

212521

16D

16D

Not joined

27

AAAB01008978

1934381

16D

17B

Bridged

124P12

28

AAAB01008817

1590424

17C

17C

Bridged

16N20, 105N12

29

AAAB01008880

4233641

18A

18C

Not joined

30

AAAB01008898

4120773

18C

19C

Bridged

105P15

31

AAAB01008952

1118246

19D

19C

Not joined

32

AAAB01008961

516376

19D

19D

Bridged

174H20, 127O12

33

AAAB01008850

840256

19D

19D

Bridged

07F16

34

AAAB01008977

457753

19D

19D

Not joined

35

AAAB01008949

335163

19E

19E

Not joined

36

AAAB01008897

259841

19E

19E

Not joined

2R chromosome

Centromere end

2L chromosome

Centromere end

37

AAAB01008942

373146

20A

20A

Not joined

38

AAAB01008026

124951

20A

20A

Not joined

39

AAAB01008864

318965

20B

20B

Not joined

40

AAAB01008968

3184012

20D

20B

Bridged

01I16, 01J12

41

AAAB01008905

1027887

20D

20D

Not joined

42

AAAB01008948

3345744

21A

21B

Not joined

43

AAAB01008456

41134

21B

21B

Not joined

44

AAAB01008827

28099

21B

21B

Not joined

45

AAAB01008900

4906461

21C

21F

Not joined

46

AAAB01008810

494023

21F

22A

Not joined

47

AAAB01008960

23099915

22A

25D

Not joined

48

AAAB01008807

12309988

28D

25D

Not joined

2Lchromosome

Telomere end

3R chromosome

Telomere end

49

AAAB01008964

12399987

30E

29A

Joined

50

AAAB01008944

6709423

30E

31D

Joined

51

AAAB01008984

12483120

32A

33D

Joined and bridged

11E04

52

AAAB01008835

1771096

33D

34A

Joined

53

AAAB01008797

1002333

34A

34B

Not joined

54

AAAB01008839

2408169

34C

34B

Joined and bridged

08B11

55

AAAB01008980

16417966

34C

37D

Not joined

56

AAAB01008822

56627

37D

37D

Not joined

57

AAAB01008971

377729

37D

37D

Not joined

58

AAAB01008943

173243

37D

37D

Not joined

3R chromosome

Centromere end

3L chromosome

Centromere end

59

AAAB01008981

219224

38A

38A

Not joined

60

AAAB01008985

236235

38A

38A

Not joined

61

AAAB01008972

744379

38A

38A

Not joined

62

AAAB01008957

222192

38A

38A

Not joined

63

AAAB01008849

2994010

38C

38B

Not joined

64

AAAB01008906

127247

38C

38C

Not joined

65

AAAB01008795

347814

38C

38C

Not joined

66

AAAB01008933

2255294

38C

39B

Not joined

67

AAAB01008838

221210

39A

39A

Not joined

68

AAAB01008796

270581

39B

39B

Bridged

22E23, 119N12

69

AAAB01008848

1927899

39B

39C

Joined and bridged

133F8, 12F24

70

AAAB01008979

1577277

40A

39C

Joined

71

AAAB01008951

359421

40A

40A

Joined and bridged

02H06

72

AAAB01008823

3392972

41A

40B

Joined and bridged

04P06, 10C06, 08F18

73

AAAB01008793

402616

41A

41A

Joined and bridged

160H13

74

AAAB01008804

907607

41B

41A

Joined

75

AAAB01008816

6058108

42B

41B

Not joined

76

AAAB01008966

3863510

43B

42C

Joined

77

AAAB01008956

1048260

43B

43B

Joined and bridged

128N23

78

AAAB01008090

381451

43B

43B

Joined and bridged

131N20, 143K17, 23C10

79

AAAB01008834

2541584

43D

43B

Bridged

12N18, 08K01, 102F22, 172A24, 19C24, 23K03

80

AAAB01008986

12698247

46D

43D

Not joined

3L chromosome

Telomere end

*This represents the original scaffold lengths. When adjacent scaffolds overlap, part of one of the scaffolds was designated as an alternative assembly and excluded from the chromosome assembly (see Additional data file 6). The 28 scaffolds shown in bold have been newly mapped or oriented.

Sharakhova et al. Genome Biology 2007 8:R5   doi:10.1186/gb-2007-8-1-r5