Research
Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis
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* Corresponding author: Gloria M Coruzzi gloria.coruzzi@nyu.edu
- † Equal contributors
1 Department of Biology, New York University, Washington Square East, New York, NY 10003, USA
2 Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile. Alameda 340. 8331010. Santiago, Chile
3 Department of Statistics, Penn State. 326 Thomas Building, University Park, PA 16802, USA
4 Courant Institute of Mathematical Sciences, New York University. 251 Mercer Street, New York, NY 10012, USA
5 Biochimie et Physiologie Moleculaire des Plantes, INRA, Place Viala, F-34060 Montpellier Cedex 1, France
Genome Biology 2007, 8:R7 doi:10.1186/gb-2007-8-1-r7
Published: 11 January 2007Additional files
Additional data file 1:
Detailed information about the regulation and annotation for the genes. This file supports Table 1 in the main text.
Format: XLS Size: 1.7MB Download file
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Additional data file 2:
Four supplemental figures. Figure S1: centroid plots for each pattern determined by AOV as indicated in the Results section. Figure S2: Bird's-eye view of the gene network model. Figure S3: higher resolution version of Figure 4. Figure S4: Comparison of microarray and Q-PCR data.
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Additional data file 3:
All interaction information collected to produce the network model used in this paper.
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Additional data file 4:
The legend for each edge label used in Additional data file 3.
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Additional data file 5:
CHP files generated with the Affymetrix MAS v5.0 software as described in the Materials and methods.
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