Table 2

Auxin regulatory subnetwork

Pattern

PUB_LOCUS

TIGR annotation

-N independent

At2g17500

Auxin efflux carrier family protein

-N independent

At5g01990

Auxin efflux carrier family protein

-N independent

At1g23080

Auxin efflux carrier protein

-N independent

At2g01420

Auxin transport protein

-N independent

At1g59750

Auxin-responsive factor (ARF1)

-N independent

At1g10940

Serine/threonine protein kinase, similar to serine/threonine-protein kinase ASK1

-N independent

At1g19850

Transcription factor MONOPTEROS (MP)/auxin-responsive protein (IAA24)/auxin response factor 5 (ARF5).

-C (-C-N) -N

At1g76520

Auxin efflux carrier family protein

-C (-C-N) -N

At5g62000

Transcriptional factor B3 family protein/auxin-responsive factor.

-C independent

At2g33310

Auxin-responsive protein/indoleacetic acid-induced protein 13 (IAA13)

-C -CN -N

At1g51950

Auxin-responsive protein/indoleacetic acid-induced protein 18 (IAA18)

-C -N

At1g04550

Auxin-responsive protein/indoleacetic acid-induced protein 12 (IAA12)

-CN +N

At3g62980

Transport inhibitor response 1 (TIR1) (FBL1) E3 ubiquitin ligase SCF complex F-box subunit

+N independent

At3g23030

Auxin-responsive protein/indoleacetic acid-induced protein 2 (IAA2)

+C independent

At1g73590

Auxin efflux carrier protein, putative (PIN1) identical to putative auxin efflux carrier protein; AtPIN1

+C independent

At5g57090

Auxin transport protein (EIR1)

+C independent

At4g14560

Auxin-responsive protein/indoleacetic acid-induced protein 1 (IAA1)

+C independent

At1g04250

Auxin-responsive protein/indoleacetic acid-induced protein 17 (IAA17)

+C independent

At1g04240

Auxin-responsive protein/indoleacetic acid-induced protein 3 (IAA3)

+C independent

At2g22670

Auxin-responsive protein/indoleacetic acid-induced protein 8 (IAA8)

Gutiérrez et al. Genome Biology 2007 8:R7   doi:10.1186/gb-2007-8-1-r7