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All duplicates are not equal: the difference between small-scale and genome duplication

Luke Hakes†, John W Pinney†, Simon C Lovell, Stephen G Oliver and David L Robertson*

Author Affiliations

Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, UK

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Genome Biology 2007, 8:R209 doi:10.1186/gb-2007-8-10-r209

Published: 4 October 2007

Additional files

Additional data file 1:

WGDs are illustrated in blue and SSDs are illustrated in red (found at 40% sequence identity), yellow (30% ID), and green (20% ID). Mean shared interaction ratio r is plotted against sequence divergence measured by Ka. The rightmost bin indicates the mean shared interaction ratio for WGDs, three sets of SSDs and pairs of proteins selected at random from the genome (black). Error bars show standard errors on the mean of r for each bin.

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Open Data

Additional data file 2:

WGDs are illustrated in blue, SSDs in red (found at 40% sequence identity), yellow (30% ID) and green (20% ID), and random gene pairings in gray. A higher semantic distance indicates greater functional divergence.

Format: PDF Size: 21KB Download file

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Open Data

Additional data file 3:

WGDs are illustrated in blue and SSDs are illustrated in red (found at 40% sequence identity), yellow (30% ID) and green (20% ID).

Format: PDF Size: 20KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data