Table 4 |
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|
CRP gene haploinsufficiency |
||||||||
|
CRP genea |
Genetic analysisb |
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|
|
|
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|
Symbol |
Location |
CRP gene mutationsc, d |
Deletions removing a single CRP genec, e |
Other evidence |
Is the CRP gene a Minute?f |
No. of candidate Minute genesg |
Minute synonymh |
Referencei |
|
|
||||||||
|
X chromosome |
||||||||
|
RpL36 |
1B12 |
M |
Yes |
M(1)1B |
[53] |
|||
|
RpL22 |
1C4 |
+ |
+ |
No |
||||
|
sta/RpSA |
2B1 |
+ |
+ |
No |
||||
|
RpL35 |
5A11 |
Lies in a gap in deletion coverage. 5A6-13 aneuploids were Minute (Merriam et al. [55]) |
Likely |
33 |
M(1)5A |
|||
|
RpL7A |
6B1 |
M |
Likely |
2 |
M(1)5D6A |
|||
|
RpL17 |
6C10 |
Lies in a gap in deletion coverage |
Likely |
12 |
New? |
|||
|
RpS6 |
7C2 |
M |
M |
Yes |
M(1)7BC and M(1)7C |
[2] |
||
|
RpS14a |
7C6-7 |
A deletion that removes RpS14a and RpS14b is not Minute [95] |
No |
|||||
|
RpS14b |
7C8 |
A deletion that removes RpS14a and RpS14b is not Minute [95] |
No |
|||||
|
RpS28b |
8E7 |
Lies in a gap in deletion coverage. A Minute mutation was mapped to 8D8-9A2 [153] |
Likely |
17 |
M(1)8F |
|||
|
RpS15Aa |
11E11-12 |
M |
Likely |
8 |
M(1)11F |
|||
|
RpL37a |
13B1 |
Lies in a gap in deletion coverage. 12F6-13B6 aneuploids were Minute (Merriam et al. [55]) |
Likely |
2 |
M(1)13A |
|||
|
RpS19a |
14F4 |
M |
Likely |
14 |
M(1)14E |
|||
|
RpS5a |
15E5-7 |
M |
Lies in a gap in deletion coverage |
Yes |
M(1)15D |
[44] |
||
|
RpS10b |
18D3 |
M |
M |
Yes |
M(1)18C |
|||
|
Chromosome arm 2L |
||||||||
|
RpLP1 |
21C2 |
M |
M |
Yes |
M(2)21C |
[50] |
||
|
oho23B/RpS21 |
23B6 |
M |
M |
Yes |
M(2)23B |
[49] |
||
|
RpL40 |
24E1 |
M |
Likely |
4 |
M(2)24D |
|||
|
RpL27A |
24F3 |
M |
M |
Yes |
M(2)24F |
|||
|
RpL37A |
25C4 |
M |
The interval between flanking non-Minute deletions contains only RpL37A |
Yes |
M(2)25C |
|||
|
RpL36A |
28D3 |
M |
Likely |
5 |
M(2)28DE* |
|||
|
RpS13 |
29B2 |
M |
M |
Yes |
M(2)29B* |
[45] |
||
|
sop/RpS2 |
30E1 |
+ |
+ |
No |
||||
|
RpL13 |
30F3 |
M |
The interval between flanking non-Minute deletions contains only RpL13 |
Yes |
M(2)31A |
|||
|
RpL7 |
31B1 |
M |
Likely |
2 |
M(2)31A |
|||
|
RpS27A |
31E1 |
M |
Likely |
6 |
M(2)31E* |
|||
|
RpL9 |
32C1 |
M |
M |
Yes |
M(2)32D |
[46] |
||
|
RpL24 |
34B10 |
M |
Likely |
8 |
M(2)34BC* |
|||
|
RpS26 |
36F4 |
M |
M |
Yes |
M(2)36F |
|||
|
RpL30 |
37B9 |
+ |
+ |
No |
||||
|
RpL21 |
40A-B |
M |
Likely |
10 |
M(2)39F |
|||
|
RpL5 |
40B |
M |
M |
Yes |
M(2)40B* |
[51] |
||
|
Chromosome arm 2R |
||||||||
|
RpL38 |
41C-E |
M |
M |
Yes |
M(2)41A |
[51] |
||
|
RpL31 |
45F5 |
M |
Lies in a gap in deletion coverage |
Yes |
M(2)45F* |
|||
|
RpS15Ab |
47C1 |
+ |
No |
|||||
|
RpS11 |
48E8-9 |
M |
Lies in a gap in deletion coverage |
Yes |
M(2)48E* |
|||
|
RpS23 |
50E4 |
M |
Likely |
2 |
M(2)50E* |
|||
|
RpS15 |
53C8 |
M(2)531 Minute phenotype rescued by duplication of 51F-54A [154] but not by a RpLP2 transgene [155] |
Likely |
16 |
M(2)53 |
|||
|
RpLP2 |
53C9 |
M |
Likely |
5 |
M(2)53 |
|||
|
RpL18A |
54C3 |
Lies in a gap in deletion coverage |
Likely |
16 |
New? |
|||
|
RpL11 |
56D7 |
Lies in a gap in deletion coverage. 56C-D aneuploids were Minute [55] |
Likely |
3 |
M(2)56CD |
|||
|
RpS18 |
56F11 |
M |
Likely |
2 |
M(2)56F |
|||
|
RpL29 |
57D8 |
+ |
No |
|||||
|
RpS16 |
58F1 |
Deletions that remove both RpS16 and RpS24 are Minute. The Minute mutations M(2)58F1 and RpS24SH2053 complement, suggesting RpS16 is a Minute gene |
Likely |
25 |
M(2)58F |
|||
|
RpS24 |
58F3 |
M |
Deletions that remove both RpS16 and RpS24 are Minute |
Yes |
M(2)58F |
|||
|
RpL23 |
59B3 |
+ |
No |
|||||
|
RpL37b |
59C4 |
+ |
No |
|||||
|
RpL12 |
60B7 |
RpL12 and RpL39 lie in the same gap in deletion coverage. 60B3-10 aneuploids were Minute [156] |
Likely |
9 |
M(2)60B |
|||
|
RpL39 |
60B7 |
RpL12 and RpL39 lie in the same gap in deletion coverage. 60B3-10 aneuploids were Minute [156] |
Likely |
9 |
M(2)60B |
|||
|
RpL41 |
60E5 |
+ |
+ |
No |
||||
|
RpL19 |
60E11 |
M |
A deletion that removes RpL19 and RpL41 is Minute |
Yes |
M(2)60E |
[42] |
||
|
Chromosome arm 3L |
||||||||
|
RpL23A |
62A10 |
M |
Likely |
8 |
M(3)62A |
|||
|
RpL8 |
62E7 |
Lies in a gap in deletion coverage containing only RpL8. 62E-63A aneuploids were Minute [54] |
Yes |
M(3)62F |
||||
|
RpL28 |
63B14 |
M |
Likely |
10 |
M(3)63B |
|||
|
RpL18 |
65E9 |
M |
Likely |
8 |
M(3)65F |
|||
|
RpL14 |
66D8 |
M |
Lies in a gap in deletion coverage |
Yes |
M(3)66D |
[47] |
||
|
RpS17 |
67B5 |
A deletion removing both RpS17 and RpS9 is Minute. The unsequenced Minute mutations RpS174 and RpS176 complement the Minute mutation RpS9EP3299, suggesting RpS17 is a Minute gene |
Likely |
13 |
M(3)67C |
|||
|
RpS9 |
67B11 |
M |
A deletion removing both RpS17 and RpS9 is Minute |
Yes |
M(3)67C |
|||
|
RpL10Ab |
68E1 |
+ |
No |
|||||
|
RpS12 |
69F5 |
+ |
A deletion that removes RpS12 and RpS4 is Minute |
No |
||||
|
RpS4 |
69F6 |
A deletion that removes RpS12 and RpS4 is Minute |
Likely |
2 |
M(3)69E |
|||
|
RpL26 |
75E4 |
+ |
No |
|||||
|
RpLP0 |
79B2 |
+ |
+ |
No |
||||
|
Qm/RpL10 |
80A |
M |
Likely |
23 |
M(3)80 |
|||
|
RpL15 |
80F |
M |
Likely |
= 11 |
M(3)80F* |
|||
|
Chromosome arm 3R |
||||||||
|
RpL35A |
83A4 |
Lies in a gap in deletion coverage |
Likely |
3 |
New? |
|||
|
RpL13A |
83B6-7 |
M |
Lies in a gap in deletion coverage |
Yes |
M(3)83B* |
[52] |
||
|
RpL34b |
85D15 |
Lies in a gap in deletion coverage |
Likely |
3 |
New? |
|||
|
RpS29 |
85E8 |
M |
M |
Yes |
M(3)85E |
|||
|
RpS25 |
86D8 |
A deletion that removes RpS25 and RpL3 is Minute |
Likely |
14 |
M(3)86D |
|||
|
RpL3 |
86D8 |
+ |
No |
|||||
|
RpS5b |
88D6 |
+ |
+ |
No |
||||
|
RpL10Aa |
88D10 |
+ |
No |
|||||
|
RpS20 |
93A1 |
A deletion that removes RpS20 and RpS30 is Minute |
Likely |
21 |
M(3)93A* |
|||
|
RpS30 |
93A2 |
A deletion that removes RpS20 and RpS30 is Minute |
Likely |
21 |
M(3)93A* |
|||
|
RpS3 |
94E13 |
M |
M |
Yes |
M(3)95A |
[43] |
||
|
RpS19b |
95C13 |
+ |
No |
|||||
|
RpS27 |
96C8 |
M |
Likely |
5 |
M(3)96C |
|||
|
RpL27 |
96E9-10 |
M |
Likely |
6 |
M(3)96CF |
|||
|
RpL34a |
96F10 |
+ |
No |
|||||
|
RpS10a |
98A14 |
+ |
No |
|||||
|
RpL4 |
98B6 |
M |
Likely |
6 |
M(3)98B* |
|||
|
RpS8 |
99C4 |
Lies in a gap in deletion coverage. 99B aneuploids were Minute [157] |
Likely |
11 |
M(3)99B |
|||
|
RpS28a |
99D2 |
The Minute phenotype of a deletion removing RpS28a and RpL32 is rescued by a RpL32 transgene [41] |
No |
|||||
|
RpL32 |
99D3 |
The Minute phenotype of a deletion removing RpS28a and RpL32 is rescued by a RpL32 transgene [41] |
Yes |
M(3)99D |
[41] |
|||
|
RpS7 |
99E2 |
Lies in a gap in deletion coverage. 99E-F aneuploids were Minute [157] |
Likely |
11 |
M(3)99E |
|||
|
RpL6 |
100C7 |
Lies in a gap in deletion coverage. 100C-F aneuploids were Minute [157] |
Likely |
16 |
M(3)100CF |
|||
|
Chromosome 4 |
||||||||
|
RpS3A |
101F1 |
M |
M |
Yes |
M(4)101 |
[48] |
||
|
|
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|
aBold font indicates the member of a duplicate gene pair that is expressed in a small number of tissues and/or at relatively low levels. bComplete details are given in Additional data file 4. c'M' indicates that mutation or deletion heterozygotes display a Minute bristle phenotype; '+' indicates they are wild type; a blank indicates the absence of appropriate mutations or deletions. dMutations mapped molecularly to a single CRP gene. eDeletions removing several genes, but only a single CRP gene. fJudged according to evidence summarized in previous three columns and presented in detail in Additional data file 4. gThe maximum number of genes that could correspond to the Minute; defined as the number of genes between the relevant deletion breakpoints minus the number of genes with non-Minute mutations. hMinute synonyms from literature sources (see Additional data files 3 and 4). Asterisks indicate new synonyms assigned in this study. iReference demonstrating definite correspondence between a Minute locus and CRP gene. Where no reference is given, the correspondence is shown for the first time in this study. |
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|
Marygold et al. Genome Biology 2007 8:R216 doi:10.1186/gb-2007-8-10-r216 |
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