Table 4

Estimated parameter values for the exponential model of RTR and InDel rate

Model for mean

Model for median



TFBS name

a

b

a

b


E2F

-0.216

0.226

-0.181

0.184

Myc

-0.252

0.252

-0.265

0.265

NFκB

-0.072

0.072

-0.035

0.035


Simulation results suggested that the TFBS RTR can be modeled by an exponential function of InDel rates given in equation 5. The values for parameters a and b were estimated from observed mean and median values of RTRs at different InDel rates.

Huang et al. Genome Biology 2007 8:R225   doi:10.1186/gb-2007-8-10-r225

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