Table 6 |
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|
Functional TFBS constraints used in the promoter simulation |
||||||
|
Name |
Accession no. |
Length (bp) |
Strand |
Location (min, max) |
Copy no. (min, max) |
Cutoff |
|
|
||||||
|
YY1E2F |
MA0095 (YY1) MA0024 (E2F) |
13 |
+ |
(20, 30) |
(1, 1) |
0.90 |
|
Pax6 |
MA0069 |
14 |
+ |
(50, 70) |
(1, 1) |
0.90 |
|
TP53 |
MA0106 |
20 |
+ |
(360, 400) |
(1, 1) |
0.90 |
|
IRF2 |
MA0051 |
18 |
+ |
(420, 480) |
(1, 1) |
0.90 |
|
PPARG |
MA0066 |
20 |
+ |
(2000, 2080) |
(1, 1) |
0.90 |
|
ROAZ |
MA0116 |
15 |
+ |
(2100, 2200) |
(1, 1) |
0.90 |
|
|
||||||
|
The accession numbers in the second column are from the JASPAR database [39]. 'Location' refers to the restriction on the upstream minimum and maximum distances to transcription start site. YY1E2F is a composite TFBS created by joining the YY1 and E2F sites. |
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|
Huang et al. Genome Biology 2007 8:R225 doi:10.1186/gb-2007-8-10-r225 |
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