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Resolution: standard / high Figure 4.
RT-PCR analysis confirms selected gene responses. Embryos were exposed to the indicated
toxicants (500 ng/l TCDD; 15 mg/l DTT; 5 mg/l Cd; 60 μg/l MeHg; 50 mg/l VA; 50 mg/l
4CA; 79 mg/l As) or vehicle alone (embryo medium or 0.2% ethanol or 0.025% DMSO, 1.4
mg/l toluene) between 96 and 120 hpf. (a) cDNA was synthesized and subjected to PCR with primers specific for the selected genes
indicated. Gene ID refers to the accession number in GenBank. The number of temperature
cycles (cycle numbers) for every set of amplifications is indicated. The fold-change
column summarizes the results from the microarray experiments for comparison with
the RT-PCR results shown in (b). See legend of Figure 1 for details of treatments and controls. β-actin mRNA was
used as a toxicant-insensitive reference. ND, not determined, as the actin gene response
fell into the class of nonregulated genes in the microarray results.
Yang et al. Genome Biology 2007 8:R227 doi:10.1186/gb-2007-8-10-r227 |