Additional data file 9.
Each page of the PDF file corresponds to an individual chromosome. On each page the clones on a chromosome are ordered along the x-axis and the 95 samples that were investigated for CNV in  are plotted on the y-axis. (Note that we could not obtain mapping information for 1% of the clones and so they were removed from our analysis.) A green/red region on the heatmap indicates that the fitted loess values in this region are consistently greater/less than zero. The samples have been ordered using the Ward agglomeration method and a Euclidean distance metric. The scale along the bottom of each figure gives the location of the cytobands on a chromosome. Note that some of the heatmaps are predominantly red (noticeably chromosomes 19 and 22) - this is because the median log2 ratio is consistently less than 0 for these chromosomes.
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Marioni et al. Genome Biology 2007 8:R228 doi:10.1186/gb-2007-8-10-r228