Research
Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia
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* Corresponding author: Ya-Ping Zhang zhangyp@mail.kiz.ac.cn
1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China
2 Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, 2 North Greenlake Street, Kunming 650091, China
3 The Graduate School of the Chinese Academy of Sciences, 19 Yuquan Street, Beijing, 100039, China
4 Center for Pharmacogenomics, Department of Psychiatry and Behavioral Science, University of Miami Miller School of Medicine, 1580 NW 10th Ave., Miami, Florida 33136, USA
5 Key Laboratory of Animal Models and Human Disease Mechanisms, 32 East Jiaochang Road, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China
6 China Agriculture University, 2 West Yuanmingyuan Street, Beijing 10094, China
7 College of Life Sciences, Sun Yat-sen University, 135 West Xin'gang Street, Guangzhou 510275, China
Genome Biology 2007, 8:R245 doi:10.1186/gb-2007-8-11-r245
Published: 19 November 2007Additional files
Additional data file 1:
Unrooted NJ tree. Shown is an unrooted NJ tree of 119 mtDNA D-loop sequence haplotypes identified in 722 wild boar and domestic pig samples.
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Additional data file 2:
Sample information for the complete mtDNAs. Presented is sample information for the complete mtDNAs analyzed in this study.
Format: XLS Size: 34KB Download file
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Additional data file 3:
Classification tree of 42 (near) complete mtDNA sequences in clade A. Shown is the classification tree of 42 (near) complete mtDNA sequences in clade A in Figure 1.
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Additional data file 4:
Phylogenetic trees: maximum parsimony and the Bayesian methods. Presented are phylogenetic trees calculated using the maximum parsimony and the Bayesian methods.
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Additional data file 5:
mtDNA sequence information and haplogroup classification. Presented are six tables (Tables S1 to S6) listing mtDNA sequence information and haplogroup classification of wild boars and domestic pigs analyzed in this study.
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Additional data file 6:
Phylogeographic distribution of haplogroups and hypothetical dispersal routes. Presened are phylogeographic distribution of haplogroups and hypothetical dispersal routes of East Asian wild boars and domestic pigs.
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Additional data file 7:
Genetic diversity of samples. Presented is a table showing genetic diversity of samples in each geographic region.
Format: XLS Size: 19KB Download file
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Additional data file 8:
Primers. Presented is a table listing all the primers used for pig complete mtDNA sequencing and haplogroup motif detection.
Format: DOC Size: 92KB Download file
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