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Wu GS
Yao YG
Qu KX
Ding ZL
Li H
Palanichamy MG
Duan ZY
Li N
Chen YS
Zhang YP

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Wu GS
Yao YG
Qu KX
Ding ZL
Li H
Palanichamy MG
Duan ZY
Li N
Chen YS
Zhang YP
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Research

Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia

Gui-Sheng Wu¹^,2^,3^,4 , Yong-Gang Yao¹^,5 , Kai-Xing Qu¹ , Zhao-Li Ding² , Hui Li¹ , Malliya G Palanichamy² , Zi-Yuan Duan¹ , Ning Li⁶ , Yao-Sheng Chen⁷ and Ya-Ping Zhang¹^,2

¹State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China

²Laboratory for Conservation and Utilization of Bio-resource, Yunnan University, 2 North Greenlake Street, Kunming 650091, China

³The Graduate School of the Chinese Academy of Sciences, 19 Yuquan Street, Beijing, 100039, China

⁴Center for Pharmacogenomics, Department of Psychiatry and Behavioral Science, University of Miami Miller School of Medicine, 1580 NW 10^thAve., Miami, Florida 33136, USA

⁵Key Laboratory of Animal Models and Human Disease Mechanisms, 32 East Jiaochang Road, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China

⁶China Agriculture University, 2 West Yuanmingyuan Street, Beijing 10094, China

⁷College of Life Sciences, Sun Yat-sen University, 135 West Xin'gang Street, Guangzhou 510275, China

author email corresponding author email

Genome Biology 2007, 8:R245doi:10.1186/gb-2007-8-11-r245


Published:	19 November 2007

Subject areas: Evolution, Genome studies

Additional files

Additional data file 1:

Unrooted NJ tree. Shown is an unrooted NJ tree of 119 mtDNA D-loop sequence haplotypes identified in 722 wild boar and domestic pig samples.

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Additional data file 2:

Sample information for the complete mtDNAs. Presented is sample information for the complete mtDNAs analyzed in this study.

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Additional data file 3:

Classification tree of 42 (near) complete mtDNA sequences in clade A. Shown is the classification tree of 42 (near) complete mtDNA sequences in clade A in Figure 1.

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Additional data file 4:

Phylogenetic trees: maximum parsimony and the Bayesian methods. Presented are phylogenetic trees calculated using the maximum parsimony and the Bayesian methods.

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Additional data file 5:

mtDNA sequence information and haplogroup classification. Presented are six tables (Tables S1 to S6) listing mtDNA sequence information and haplogroup classification of wild boars and domestic pigs analyzed in this study.

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Additional data file 6:

Phylogeographic distribution of haplogroups and hypothetical dispersal routes. Presened are phylogeographic distribution of haplogroups and hypothetical dispersal routes of East Asian wild boars and domestic pigs.

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Additional data file 7:

Genetic diversity of samples. Presented is a table showing genetic diversity of samples in each geographic region.

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Additional data file 8:

Primers. Presented is a table listing all the primers used for pig complete mtDNA sequencing and haplogroup motif detection.

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