|
Geographic distribution of Asian domestic pigs |
|||||||||||||
| Haplogroup |
NEA (22) |
UMYR (54) |
DRYR (33) |
URYZ (88) |
MDYZ (174) |
Mekong (174) |
SC (46) |
Japan (20)d |
SA (6) |
Other (42) |
AN (33)c |
Total (688)e |
|
|
|
|||||||||||||
| D1a1a |
Individuals (%)a |
72.7 |
22.2 |
72.7 |
12.5 |
51.1 |
13.3 |
10.9 |
2.6 |
0 |
14.3 |
12.1 |
25.8 |
| D1a1a |
Haplotypesb |
4 (2) |
1 (0) |
0 |
9 (4) |
15 (9) |
4 (0) |
5(0) |
- |
0 |
4 (2) |
2 (1) |
- |
| D1a2 |
Individuals (%) |
0 |
38.9 |
0 |
52.3 |
1.7 |
13.3 |
0 |
0 |
0 |
0 |
0 |
14.7 |
| D1a2 |
Haplotypes |
0 |
0 |
0 |
6 (2) |
1 (0) |
10 (4) |
0 |
0 |
0 |
0 |
0 |
- |
| D1a3 |
Individuals (%) |
0 |
14.8 |
0 |
0 |
1.7 |
0 |
0 |
0 |
0 |
0 |
0 |
1.7 |
| D1a* |
Individuals (%) |
0 |
0 |
0 |
6.8 |
7.5 |
2.2 |
34.8 |
0 |
0 |
4.8 |
12.1 |
6.4 |
| D1b |
Individuals (%) |
0 |
0 |
0 |
0 |
0 |
26.1 |
0 |
6.6 |
0 |
45.2 |
0 |
14.1 |
| D1b |
Haplotypes |
0 |
0 |
0 |
18.2 |
1 (0) |
3 (1) |
0 |
0 |
0 |
3 (0) |
0 |
- |
| D1c |
Individuals (%) |
0 |
13.0 |
27.3 |
1.1 |
5.7 |
7.2 |
17.4 |
0 |
0 |
0 |
0 |
6.1 |
| D1d |
Individuals (%) |
0 |
0 |
0 |
0 |
1.7 |
0 |
0 |
0 |
0 |
0 |
0 |
4.7 |
| D1e |
Individuals (%) |
0 |
0 |
0 |
1.1 |
4.6 |
0.5 |
37.0 |
1.3 |
0 |
0 |
6.1 |
4.4 |
| D1g |
Individuals (%) |
0 |
9.3 |
0 |
2.3 |
0.0 |
0 |
0 |
0 |
0 |
0 |
0 |
1.1 |
| D1h |
Individuals (%) |
0 |
1.9 |
0 |
0 |
0.6 |
1.1 |
0 |
0 |
0 |
0 |
0 |
0.6 |
| D1i |
Individuals (%) |
0 |
0 |
0 |
5.6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.8 |
| D1* |
Individuals (%) |
27.3 |
0 |
0 |
0 |
23.0 |
8.3 |
0 |
6.6 |
0 |
2.4 |
0 |
10.5 |
| D2 to D4 |
Individuals (%) |
0 |
0 |
0 |
0 |
0.6 |
27.8 |
0 |
26.3 |
66.7 |
28.6 |
27.3 |
13.6 |
| D* |
Individuals (%) |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
46.1 |
0 |
4.8 |
0 |
5.8 |
| A1 without A1a |
Individuals (%) |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10.5 |
0 |
0 |
0 |
1.3 |
| A without A1 |
Individuals (%) |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
33.3 |
0 |
42.4 |
0.3 |
|
The sample size for each geographic region is given in parentheses. aNumbers refer to the proportion of individuals that are grouped into this haplogroup in each region. bNumber of haplotypes in each region. The values in parentheses refer to the number of unique haplotypes in that region. We only counted number of haplotypes and unique haplotypes for the three main haplogroups (D1a1a, D1a2, and D1b) that had a large sample size. cIndividuals in this column refer to feral pigs. dAncient DNAs. e Ancient DNAs and feral pigs are not included. | |||||||||||||
Wu et al. Genome Biology 2007 8:R245 doi:10.1186/gb-2007-8-11-r245 |
|||||||||||||