Table 4 |
||||
|
TFBS enrichment in each of the eight clusters of diurnal genes |
||||
|
Cluster |
PWM ID for TFBS |
Fold enrichment |
P value for enrichment |
TF family name |
|
|
||||
|
1 |
M00036 |
1.345 |
0 |
v-Jun |
|
M00248 |
1.631 |
0 |
Oct1 |
|
|
M00920 |
1.119 |
0 |
E2F |
|
|
M00137 |
1.439 |
0.001 |
Oct1 |
|
|
M00494 |
1.614 |
0.003 |
STAT6 |
|
|
M01011 |
1.579 |
0.003 |
HNF1 |
|
|
2 |
M00411 |
1.383 |
0 |
HNF-4alpha1 |
|
M00712 |
1.457 |
0.001 |
Myogenin |
|
|
M00331 |
1.505 |
0.003 |
Lentiviral_TATA |
|
|
M00261 |
1.294 |
0.004 |
Olf-1 |
|
|
M00658 |
1.392 |
0.005 |
PU.1 |
|
|
3 |
M01066 |
1.577 |
0 |
BLIMP1 |
|
M00731 |
1.915 |
0.001 |
Osf2 |
|
|
M00655 |
1.3 |
0.003 |
PEA3 |
|
|
4 |
M00116 |
1.711 |
0.005 |
C/EBPalpha |
|
M00123 |
1.39 |
0.005 |
c-Myc:Max |
|
|
5 |
M00641 |
1.473 |
0 |
HSF |
|
M00736 |
1.3 |
0.002 |
E2F-1:DP-1 |
|
|
6 |
M00634 |
1.355 |
0 |
GCM |
|
M00083 |
1.284 |
0.002 |
MZF1 |
|
|
M01036 |
1.223 |
0.004 |
COUPTF |
|
|
M00069 |
1.265 |
0.005 |
YY1 |
|
|
M00119 |
1.282 |
0.005 |
Max |
|
|
7 |
None |
|||
|
8 |
M00762 |
1.446 |
0.004 |
PPAR,_HNF-4,_COUP,_RAR |
|
|
||||
|
A more detailed list is available in Additional data file 3. |
||||
|
Yang et al. Genome Biology 2007 8:R247 doi:10.1186/gb-2007-8-11-r247 |
||||
