Software
PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites
Department for Proteomics and Signal Transduction, Max-Planck Institute for Biochemistry, Am Klopferspitz, D-82152 Martinsried, Germany
Genome Biology 2007, 8:R250 doi:10.1186/gb-2007-8-11-r250
Published: 26 November 2007Abstract
PHOSIDA http://www.phosida.com webcite, a phosphorylation site database, integrates thousands of high-confidence in vivo phosphosites identified by mass spectrometry-based proteomics in various species. For each phosphosite, PHOSIDA lists matching kinase motifs, predicted secondary structures, conservation patterns, and its dynamic regulation upon stimulus. Using support vector machines, PHOSIDA also predicts phosphosites.
