Table 3

Percentage of synchronously peaking genes in the Thy-Noc dataset

Peaks of expression (% of peaking genes per complex)

Protein complex
 2 h-0 h
 4 h-2 h
 6 h-4 h
 8 h-6 h
 10 h-8 h
 12 h-10 h
 14 h-12 h
AP2
 50
 25
 25
 0
 25
 25
 50
ARC
 80
 0
 0
 80
 0
 60
 0
Arp2-3
 0
 60
 40
 0
 20
 0
 40
ATP_F0
 0
 10
 10
 20
 10
 0
 80
ATP_F1
 0
 33
 0
 33
 0
 0
 33
APC
 50
 25
 25
 38
 13
 13
 63
COX
 0
 25
 38
 0
 25
 0
 50
Centrosome
 27
 22
 14
 20
 24
 31
 39
Dynactin
 14
 0
 14
 14
 14
 14
 71
Exocyst
 29
 43
 29
 57
 14
 43
 43
Exosome
 20
 20
 40
 0
 0
 0
 60
FA
 34
 28
 34
 30
 9
 30
 40
GTC
 33
 17
 33
 17
 33
 33
 33
LRS
 6
 22
 6
 6
 6
 0
 72
MLRS
 22
 27
 24
 22
 27
 11
 62
MSRS
 20
 37
 33
 20
 7
 10
 63
Nucleopore
 37
 33
 37
 13
 3
 27
 60
Nucleosome
 13
 54
 13
 25
 8
 8
 38
ORC
 50
 17
 17
 50
 17
 33
 0
PD
 29
 14
 57
 29
 14
 29
 29
Proteasome
 30
 9
 30
 9
 13
 0
 87
RFC
 50
 0
 50
 50
 50
 25
 0
RNA Pol II
 30
 30
 70
 0
 0
 0
 40
RNA Pol III
 20
 0
 40
 40
 0
 60
 20
SNARE
 14
 57
 29
 14
 29
 29
 14
SWI-SNF
 33
 17
 33
 8
 0
 17
 42
SRP
 75
 25
 25
 0
 0
 25
 75
SCF
 33
 33
 33
 0
 33
 0
 100
SRS
 10
 40
 35
 10
 15
 5
 60
TAFIID
 23
 38
 8
 23
 23
 0
 46
TRAPP
 33
 17
 0
 17
 17
 0
 50
VHL
 0
 0
 50
 0
 0
 0
 50

For each protein complex the percentage of its synchronously peaking genes in each time interval is reported. AP2, adaptor-related protein complex 2; APC, anaphase promoting complex; ARC, axin related complex; ATP_F0, ATP synthase, H+ transporting, mitochondrial F0 complex; ATP_F1, ATP synthase, H+ transporting, mitochondrial F1 complex; COX, cytochrome c oxidase; FA, focal adhesion; GTC, golgi transport complex; MSRS, mitochondrial small ribosomal subunit; ORC, origin recognition complex; PD, pyruvate dehydrogenase; RNA Pol II, RNA polymerase II; SRP, signal recognition particle; TRAPP, trafficking protein particle complex; VHL, von Hippel-Lindau complex.

Zanivan et al. Genome Biology 2007 8:R256   doi:10.1186/gb-2007-8-12-r256