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Resolution: standard / high Figure 4.
Association of transcript abundance and clinical parameters in patients with acute
KD (cohort 2). (a) Genes and samples are organized using hierarchical clustering as in Figure 1. Sample
clusters C and D are explained in the text. Numbered vertical bars at the right of
the heat map indicate gene sets described in the text and in Additional data file
4. b) Correlation coefficients were calculated for the expression of each gene and each
of the following clinical parameters: percentage segmented neutrophils, percentage
unsegmented neutrophils (band), percentage total neutrophils, percentage lymphocytes,
age at onset, illness day, erythrocyte sedimentation rate (ESR), and level of C-reative
protein (CRP). A p value was calculated using permutation, and assigned a negative or positive value
corresponding to the direction of the correlation. Results are portrayed as a moving
average along the y-axis, with a window size of 15 clones, and were plotted for a given parameter if
the p value was less than 0.01 (marked by dotted line) over 10 or more consecutive array
elements.
Popper et al. Genome Biology 2007 8:R261 doi:10.1186/gb-2007-8-12-r261 |