Research article  

A comparison study on feature selection of DNA structural properties for promoter prediction

Yanglan Gan, Jihong Guan, Shuigeng Zhou BMC Bioinformatics 2012, 13:4 (7 January 2012)

Abstract | Provisional PDF | PubMed

Research article  

Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast

Özgen Deniz, Oscar Flores, Federica Battistini, Alberto Pérez, Montserrat Soler-López, Modesto Orozco BMC Genomics 2011, 12:489 (7 October 2011)

Abstract | Full text | PDF | PubMed

Research  

Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data

Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhattacharyya, Francisco A Perez, Sharmistha Pal, Ramana V Davuluri BMC Bioinformatics 2010, 11(Suppl 1):S65 (18 January 2010)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Methodology article  

Profile analysis and prediction of tissue-specific CpG island methylation classes

Christopher Previti, Oscar Harari, Igor Zwir, Coral del Val BMC Bioinformatics 2009, 10:116 (21 April 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Software  

ContDist: a tool for the analysis of quantitative gene and promoter properties

Michael Hackenberg, Gorka Lasso, Rune Matthiesen BMC Bioinformatics 2009, 10:7 (7 January 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method  

Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

Kevin Brick, Junichi Watanabe, Elisabetta Pizzi Genome Biology 2008, 9:R178 (18 December 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Editor’s summary