Method
Determining promoter location based on DNA structure first-principles calculations
-
* Corresponding author: Modesto Orozco modesto@mmb.pcb.ub.es
1 Institute for Research in Biomedicine, Parc Científic de Barcelona, Josep Samitier, Barcelona 08028, Spain
2 Departament de Bioquímica i Biología Molecular, Facultat de Biología, Avgda Diagonal, Barcelona 08028, Spain
3 Grup de recerca en Bioinformàtica i Estadística Mèdica, Departament de Biologia de Sistemes, Universitat de Vic. Laura, 13 08500 VIC, Spain
4 Computational Biology Program, Barcelona Supercomputer Center, Jordi Girona, Edifici Torre Girona, Barcelona 08028, Spain
5 Institut Català per la Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys, 23. Barcelona 08010, Spain
6 Instituto Nacional de Bioinformática, Structural Bioinformatics Unit, Parc Cientific de Barcelona, Josep Samitier, Barcelona 08028, USA
Genome Biology 2007, 8:R263 doi:10.1186/gb-2007-8-12-r263
Published: 11 December 2007Additional files
Additional file 1:
Supplementary figures showing plots of dinucleotide helical parameters and additional performance tests of ProStar.
Format: PDF Size: 258KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
Promoter prediction methods described in this paper and a detailed evaluation of their performance.
Format: PDF Size: 24KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Extended description of the performance test and the averaged score measure.
Format: PDF Size: 19KB Download file
This file can be viewed with: Adobe Acrobat Reader