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Breakdown of exon-level accuracy for human. The first two rows show sensitivity and specificity for all exons when a prediction is counted as correct if it overlaps an exon in the evaluation set by at least 1 bp. The remaining rows show sensitivity and specificity for the exact prediction of the four different exon types: initial, internal, and terminal exons in multi-exon genes, and exons that contain a gene's full coding region. |
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| N-SCAN (mouse) |
CONTRAST (mouse) |
CONTRAST (11 informants) |
|
|
|
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| Exon overlap Sn |
91.2 |
95.5 |
96.9 |
| Exon overlap Sp |
69.6 |
73.9 |
75.5 |
| Initial exon Sn |
60.9 |
72.9 |
76.9 |
| Initial exon Sp |
48.8 |
54.1 |
56.9 |
| Internal exon Sn |
89.4 |
94.6 |
96.2 |
| Internal exon Sp |
68.7 |
76.1 |
77.4 |
| Terminal exon Sn |
70.4 |
80.6 |
83.5 |
| Terminal exon Sp |
53.8 |
59.8 |
61.9 |
| Single exon Sn |
45.9 |
65.2 |
67.5 |
| Single exon Sp |
27.7 |
18.8 |
24.8 |
Gross et al. Genome Biology 2007 8:R269 doi:10.1186/gb-2007-8-12-r269 |
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