Table 2 |
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|
Effect of filter threshold setting and LPI score ranking on eukaryotic BLAST matches to E. coli |
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| Filter threshold |
Query id |
Match id |
LPI |
Percent identity |
Query length |
Align length |
e-value |
Bit score |
Match species |
Query annotation |
Match annotation |
|
|
|||||||||||
| 0.0 |
AAC74689 |
CAC43289 |
0.009 |
99 |
603 |
603 |
0 |
1261 |
Arabidopsis thaliana |
Beta-glucuronidase |
Beta-glucuronidase |
| 0.02 |
AAC74689 |
ZP_00698534 |
0.981 |
99 |
603 |
603 |
0 |
1255 |
Shigella boydii |
Beta-galactosidase/beta-glucuronidase |
|
|
|
|||||||||||
| 0.0 |
AAC76624 |
AAM52982 |
0.009 |
99 |
382 |
382 |
0 |
741 |
Dunaliella bardawil |
Mannitol-1-phosphate dehydrogenase |
Mannitol-1-phosphate dehydrogenase |
| 0.02 |
AAC76624 |
AAN45081.2 |
0.981 |
98 |
382 |
382 |
0 |
738 |
Shigella flexneri |
Mannitol-1-phosphate dehydrogenase |
|
|
|
|||||||||||
| 0.0 |
AAC73440 |
AAU04862 |
0.001 |
96 |
427 |
425 |
0 |
830 |
Tamarix chinensis |
Cytosine deaminase |
Cytosine deaminase |
| 0.2 |
AAC73440 |
AAV79026 |
0.925 |
81 |
427 |
420 |
0 |
706 |
Salmonella enterica |
Cytosine deaminase |
|
|
|
|||||||||||
| 0.0 |
AAC73353 |
AAA35359 |
0.088 |
78 |
155 |
99 |
7.0E-42 |
171 |
Cercopithecus aethiops |
CP4-6 prophage |
None |
| 0.2 |
AAC73353 |
ZP_00825492 |
0.924 |
48 |
155 |
145 |
1.0E-36 |
153 |
Yersinia mollaretii |
Hypothetical protein |
|
|
|
|||||||||||
| 0.0 |
AAC75891 |
gi|2143952 |
0.108 |
85 |
458 |
441 |
0 |
719 |
Rattus norvegicus |
Predicted transcriptional regulator |
Hepatic glutathione transporter |
| 0.8 |
AAC75891 |
AAD12579 |
0.927 |
28 |
458 |
403 |
1.0E-38 |
164 |
Salmonella typhimurium |
HilA |
|
|
|
|||||||||||
| 0.0 |
AAC73796 |
BAB33410 |
0.029 |
100 |
108 |
108 |
1.0E-54 |
213 |
Pisum sativum |
Predicted inner membrane protein |
Putative senescence-associated protein |
|
|
|||||||||||
| 0.0 |
AAC74583 |
BAE25662 |
0.104 |
92 |
1325 |
895 |
0 |
1614 |
Musmusculus |
Predicted lipoprotein |
none |
|
|
|||||||||||
| 0.0 |
ABD18679 |
gi|1095170 |
0.108 |
93 |
234 |
179 |
3.0E-86 |
320 |
Rattus norvegicus |
Predicted protein, amino terminal fragment (pseudogene) |
Glutathione transporter |
|
|
|||||||||||
|
Rows in bold type contain the top ranked match using a zero threshold setting. Rows in italic type show cases where using a higher filter setting revealed an alternative match, with a higher LPI score, to the same genomic query. |
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|
Podell and Gaasterland Genome Biology 2007 8:R16 doi:10.1186/gb-2007-8-2-r16 |
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