|
Effect of self-definition keywords on best match lineages for E. coli |
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| Self-definition keywords |
||||
|
|
||||
| K12 83333 316407 562 |
Escherichia |
Escherichia Shigella |
Escherichia Shigella Salmonella |
|
|
|
||||
| Enterobacteria |
4,203 |
4,063 |
3,640 |
3,173 |
| Other bacteria |
34 |
96 |
346 |
632 |
| Phage |
1 |
14 |
55 |
80 |
| Eukaryotes |
0 |
6 |
12 |
18 |
| Archaea |
0 |
0 |
2 |
3 |
|
|
||||
| Total matches |
4,243 |
4,179 |
4,055 |
3,906 |
| LPImax |
0.993 |
0.984 |
0.950 |
0.918 |
| LPImax matches |
4,110 |
3,855 |
3,220 |
2,570 |
|
|
||||
| LPImax lineage |
Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia |
Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella |
Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella |
Bacteria; Proteobacteria; Gamma-proteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia |
|
Filter threshold setting was 10%. | ||||
Podell and Gaasterland Genome Biology 2007 8:R16 doi:10.1186/gb-2007-8-2-r16 |
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