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Effect of self-definition terms on best match lineages for A. thaliana |
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| Self-definition keywords |
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| Arabidopsis |
Arabidopsis Oryza |
Arabidopsis Oryza Brassica |
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| Viridiplantae |
19,229 |
12,078 |
11,658 |
| Other Eukaryotes |
583 |
3,122 |
3,191 |
| Bacteria |
162 |
812 |
850 |
| Archaea |
3 |
12 |
13 |
| Viruses |
1 |
2 |
3 |
|
|
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| Total matches |
19,978 |
16,026 |
15,715 |
| LPImax |
0.907 |
0.671 |
0.670 |
| LPImax matches |
14,215 |
2,437 |
2,960 |
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| LPImax lineage |
Eukaryota; Viridiplantae; Streptophyta; Liliopsida; commelinids; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza |
Eukaryota; Viridiplantae; Streptophyta; rosids; Brassicales; Brassicaceae; Brassica |
Eukaryota; Viridiplantae; Streptophyta; asterids; Solanales; Solanaceae; Solanum |
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Filter threshold setting was 10%. | |||
Podell and Gaasterland Genome Biology 2007 8:R16 doi:10.1186/gb-2007-8-2-r16 |
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