Table 1 |
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Input features to train CoreBoost |
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| Feature list |
Details |
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| Core promoter elements |
Score of each core element Weighted score of pairs between TATA, Inr, and CCAAT- and GC-box |
| TFBSs |
Weighted maximal scores for weight matrices from TRANSFAC and density of TFBS |
| Mechanical properties |
Weighted energy/flexibility scores around position -25 and +1 Average energy/flexibility scores Correlation with the empirical average energy/flexibility profile |
| Markovian score |
Likelihood ratios from homogeneous third order Markov models |
| k-mer frequency |
Frequency of 1- or 2-mers related to nucleotide G or C |
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TFBS, transcription factor binding site. |
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Zhao et al. Genome Biology 2007 8:R17 doi:10.1186/gb-2007-8-2-r17 |
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