|
Parameters used to evaluate hairpins |
|
| Pairing |
Energy |
|
|
|
| G-C |
-2.3 |
| A-T |
-0.9 |
| G-T |
1.3 |
| Mismatch |
3.5 |
| Gap |
6.0 |
| Loop_pen(n) |
1·(n - 2) |
|
Parameters used to evaluate the energy of a potential hairpin where n is the length of the hairpin loop. | |
Kingsford et al. Genome Biology 2007 8:R22 doi:10.1186/gb-2007-8-2-r22 |
|