Research article  

Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages

Petri Pehkonen, Lynn Welter-Stahl, Janine Diwo, Jussi Ryynanen, Anke Wienecke-Baldacchino, Sami Heikkinen, Eckardt Treuter, Knut R Steffensen, Carsten Carlberg BMC Genomics 2012, 13:50 (31 January 2012)

Abstract | Provisional PDF | PubMed

Research  

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

Raluca Gordân, Kevin F Murphy, Rachel P McCord, Cong Zhu, Anastasia Vedenko, Martha L Bulyk Genome Biology 2011, 12:R125 (21 December 2011)

Abstract | Provisional PDF | PubMed | Editor’s summary

Research article  

Genome-wide mapping of Sox6 binding sites in skeletal muscle reveals both direct and indirect regulation of muscle terminal differentiation by Sox6

Chung-Il An, Yao Dong, Nobuko Hagiwara BMC Developmental Biology 2011, 11:59 (10 October 2011)

Abstract | Full text | PDF | PubMed

Research article  

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

Rob M de Graaf, Theo A van Alen, Bas E Dutilh, Jan WP Kuiper, Hanneke JAA van Zoggel, Minh Huynh, Hans-Dieter Görtz, Martijn A Huynen, Johannes HP Hackstein BMC Genomics 2009, 10:514 (6 November 2009)

Abstract | Full text | PDF | PubMed

Research article  

FISim: A new similarity measure between transcription factor binding sites based on the fuzzy integral

Fernando Garcia, Francisco J Lopez, Carlos Cano, Armando Blanco BMC Bioinformatics 2009, 10:224 (20 July 2009)

Abstract | Full text | PDF | PubMed

Research article  

Discriminative motif discovery in DNA and protein sequences using the DEME algorithm

Emma Redhead, Timothy L Bailey BMC Bioinformatics 2007, 8:385 (15 October 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central