Method
Quantifying similarity between motifs
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* Corresponding author: William S Noble noble@gs.washington.edu
1 Department of Genome Sciences, University of Washington, 1705 NE Pacific Street, Box 355065, Seattle, WA 98195, USA
2 Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD 4072, Australia
3 Department of Computer Science and Engineering, University of Washington, 185 Stevens Way, Box 352350, Seattle, WA 98105, USA
Genome Biology 2007, 8:R24 doi:10.1186/gb-2007-8-2-r24
Published: 26 February 2007Additional files
Additional data file 1:
Accuracy of motif comparison P values: QQ plots for various column comparison functions
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Additional data file 2:
Accuracy of offset P values: QQ plots for various column comparison functions
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Additional data file 3:
Mean ROC scores for various motif column comparison functions and score combination methods for various sampling rates
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Additional data file 4:
Comparison of motif P values versus other methods of combining column scores for various sampling rates
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Additional data file 5:
Motif retrieval accuracy for various column similarity functions at a sampling rate of S/8
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Additional data file 6:
E value based retrieval rate for two additional significance levels (E-value less than 0.05 or 0.001)
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