A genome-wide transcriptional activity survey of rice transposable element-related genes
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* Corresponding author: Xing W Deng xingwang.deng@yale.edu
Department of Molecular, Cellular and Developmental Biology, Yale University, 165 Prospect Street, New Haven, CT 06520, USA
Genome Biology 2007, 8:R28 doi:10.1186/gb-2007-8-2-r28
Published: 27 February 2007Additional files
Additional data file 1:
The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using the neighbor-joining methods and rooted with human L1. Bootstrap values were calculated from 300 replicates. The sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.
Format: XML Size: 3MB Download file
Additional data file 2:
The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with human L1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.
Format: XML Size: 7.6MB Download file
Additional data file 3:
The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with soybean Soymar1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.
Format: XML Size: 4.1MB Download file
Additional data file 4:
The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with soybean Soymar1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units.
Format: GIF Size: 54KB Download file
Additional data file 5:
The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with C. elegance CeHEL1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units.
Format: EPS Size: 566KB Download file
