Genome Biology

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Open Access Research

A genome-wide transcriptional activity survey of rice transposable element-related genes

Yuling Jiao and Xing W Deng*

Author Affiliations

Department of Molecular, Cellular and Developmental Biology, Yale University, 165 Prospect Street, New Haven, CT 06520, USA

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Genome Biology 2007, 8:R28 doi:10.1186/gb-2007-8-2-r28

Published: 27 February 2007

Additional files

Additional data file 1:

The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using the neighbor-joining methods and rooted with human L1. Bootstrap values were calculated from 300 replicates. The sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.

Format: XML Size: 3MB Download file

Open Data

Additional data file 2:

The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with human L1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.

Format: XML Size: 7.6MB Download file

Open Data

Additional data file 3:

The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with soybean Soymar1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units. Names of previously reported members are shown. Names in parenthesis indicate members not covered by microarray. *Previously reported members with transcription or transposition.

Format: XML Size: 4.1MB Download file

Open Data

Additional data file 4:

The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with soybean Soymar1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units.

Format: GIF Size: 54KB Download file

Open Data

Additional data file 5:

The phylogenetic tree was generated from a multiple alignment of conceptually translated sequences by using neighbor-joining methods and rooted with C. elegance CeHEL1. Bootstrap values were calculated from 300 replicates. Sample numbers are identical to those in Table 2. Shades of gray indicate the magnitude of transcription signals, which are based on microarray hybridization signals without units.

Format: EPS Size: 566KB Download file

Open Data