Figure 8.

3D-BLAST versus fast structure search, sequence profile search, and detailed structural alignment. Comparison of 3D-BLAST with fast structure search methods (TopScan and ProtDex2), sequence profile search method (PSI-BLAST), and detailed structural alignment methods (CE and MAMMOTH) based on the precision and recall of the protein query set SCOP-108. The performance of TOPSCAN and ProtDex2 is summarized from previous work [9].