Table 1

3D-BLAST search results by copper chaperone for superoxide dismutase (PDB code 1JK9-B) from yeast as query

PDB code

Protein title

log(E value)

rmsd (Å)

Sequence identity (%)a

SCOP sccs

Species


1EJ8-A

Copper chaperone for yeast sod

-50.70

1.10

57.6

b.1.8.1

Saccharomyces cerevisiae

1QUP-A

Copper chaperone for superoxide dismutase

-27.05

0.58

28.3

d.58.17.1

Saccharomyces cerevisiae

1CC8-A

Superoxide dismutase 1 copper chaperone

-17.40

1.64

8.6

d.58.17.1

Saccharomyces cerevisiae

1TO4-A

Superoxide dismutase

-17.22

2.78

19.6

b.1.8.1

Schistosoma mansoni

1DO5-A

Human copper chaperone for superoxide dismutase domain II

-16.30

2.57

17.3

b.1.8.1

Homo sapiens

1OSD-A

Oxidized Merp from Ralstonia metallidurans CH34

-16.05

1.61

11.1

d.58.17.1

Ralstonia metallidurans

1Q0E-A

Copper, zinc superoxide dismutase

-14.22

1.68

17.7

b.1.8.1

Bos taurus

1OAL-A

Superoxide dismutase

-14.00

2.19

17.7

b.1.8.1

Photobacterium leiognathi

1SRD-A

Copper, zinc superoxide dismutase

-13.30

2.71

17.5

b.1.8.1

Synthetic construct

1FE0-A

Copper transport protein atox1

-13.10

1.40

9.9

d.58.17.1

Homo sapiens

1OZU-A

Copper, zinc superoxide dismutase

-12.70

2.42

18.5

b.1.8.1

Homo sapiens

1ESO

Copper, zinc superoxide dismutase

-12.30

2.49

17.6

b.1.8.1

Escherichia coli

1FVQ-A

Copper-transporting ATPase

-12.00

1.64

9.9

d.58.17.1

Saccharomyces cerevisiae

1JCV

Copper, zinc superoxide dismutase

-11.70

2.24

20.3

b.1.8.1

Saccharomyces cerevisiae

1S6U-A

Copper-transporting ATPase 1

-11.15

1.87

8.6

d.58.17.1

Homo sapiens

1XSO-A

Copper, zinc superoxide dismutase

-10.70

1.88

19.3

b.1.8.1

Xenopus laevis

1OQ3-A

Potential copper-transporting ATPase

-10.40

1.84

11.4

d.58.17.1

Bacillus subtilis

1VCA-A

Human vascular cell adhesion molecule-1

-10.30

3.76

15.9

b.1.1.3

Homosapiens

1KQK-A

Potential copper-transporting ATPase

-10.22

1.63

12.3

d.58.17.1

Bacillus subtilis

1MWY-A

The N-terminal domain of ZntA in the apo-form

-10.10

1.67

9.0

d.58.17.1

Escherichia coli


aAmino acid sequence identity is calculated using FASTA software. PDB, Protein Data Bank; rmsd, root mean square deviation.

Tung et al. Genome Biology 2007 8:R31   doi:10.1186/gb-2007-8-3-r31

Open Data