Table 1 |
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|
3D-BLAST search results by copper chaperone for superoxide dismutase (PDB code 1JK9-B) from yeast as query |
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| PDB code |
Protein title |
log(E value) |
rmsd (Å) |
Sequence identity (%)a |
SCOP sccs |
Species |
|
|
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| 1EJ8-A |
Copper chaperone for yeast sod |
-50.70 |
1.10 |
57.6 |
b.1.8.1 |
Saccharomyces cerevisiae |
| 1QUP-A |
Copper chaperone for superoxide dismutase |
-27.05 |
0.58 |
28.3 |
d.58.17.1 |
Saccharomyces cerevisiae |
| 1CC8-A |
Superoxide dismutase 1 copper chaperone |
-17.40 |
1.64 |
8.6 |
d.58.17.1 |
Saccharomyces cerevisiae |
| 1TO4-A |
Superoxide dismutase |
-17.22 |
2.78 |
19.6 |
b.1.8.1 |
Schistosoma mansoni |
| 1DO5-A |
Human copper chaperone for superoxide dismutase domain II |
-16.30 |
2.57 |
17.3 |
b.1.8.1 |
Homo sapiens |
| 1OSD-A |
Oxidized Merp from Ralstonia metallidurans CH34 |
-16.05 |
1.61 |
11.1 |
d.58.17.1 |
Ralstonia metallidurans |
| 1Q0E-A |
Copper, zinc superoxide dismutase |
-14.22 |
1.68 |
17.7 |
b.1.8.1 |
Bos taurus |
| 1OAL-A |
Superoxide dismutase |
-14.00 |
2.19 |
17.7 |
b.1.8.1 |
Photobacterium leiognathi |
| 1SRD-A |
Copper, zinc superoxide dismutase |
-13.30 |
2.71 |
17.5 |
b.1.8.1 |
Synthetic construct |
| 1FE0-A |
Copper transport protein atox1 |
-13.10 |
1.40 |
9.9 |
d.58.17.1 |
Homo sapiens |
| 1OZU-A |
Copper, zinc superoxide dismutase |
-12.70 |
2.42 |
18.5 |
b.1.8.1 |
Homo sapiens |
| 1ESO |
Copper, zinc superoxide dismutase |
-12.30 |
2.49 |
17.6 |
b.1.8.1 |
Escherichia coli |
| 1FVQ-A |
Copper-transporting ATPase |
-12.00 |
1.64 |
9.9 |
d.58.17.1 |
Saccharomyces cerevisiae |
| 1JCV |
Copper, zinc superoxide dismutase |
-11.70 |
2.24 |
20.3 |
b.1.8.1 |
Saccharomyces cerevisiae |
| 1S6U-A |
Copper-transporting ATPase 1 |
-11.15 |
1.87 |
8.6 |
d.58.17.1 |
Homo sapiens |
| 1XSO-A |
Copper, zinc superoxide dismutase |
-10.70 |
1.88 |
19.3 |
b.1.8.1 |
Xenopus laevis |
| 1OQ3-A |
Potential copper-transporting ATPase |
-10.40 |
1.84 |
11.4 |
d.58.17.1 |
Bacillus subtilis |
| 1VCA-A |
Human vascular cell adhesion molecule-1 |
-10.30 |
3.76 |
15.9 |
b.1.1.3 |
Homosapiens |
| 1KQK-A |
Potential copper-transporting ATPase |
-10.22 |
1.63 |
12.3 |
d.58.17.1 |
Bacillus subtilis |
| 1MWY-A |
The N-terminal domain of ZntA in the apo-form |
-10.10 |
1.67 |
9.0 |
d.58.17.1 |
Escherichia coli |
|
|
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|
aAmino acid sequence identity is calculated using FASTA software. PDB, Protein Data Bank; rmsd, root mean square deviation. |
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|
Tung et al. Genome Biology 2007 8:R31 doi:10.1186/gb-2007-8-3-r31 |
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