Table 2 |
||||
|
Average search time and mean average precision of each program on 108 queries in SCOP-108 |
||||
|
Program |
Mean of average precision |
Total searching time (s) |
Average time per query (s) |
Related to 3D-BLAST |
|
|
||||
|
PSI-BLASTa |
69.8% |
18.31 |
0.170 |
0.533 |
|
3D-BLAST |
78.2% |
34.35 |
0.318 |
1 |
|
MAMMOTHb |
82.1% |
131,855 |
1220.88 |
3838.58 |
|
CE |
83.4% |
~13.5 days |
~3 hours |
~34000 |
|
|
||||
|
Time was measured using a personal computer equipped with an Intel Pentium 2.8 GHz processor with 1,024 megabytes of RAM memory. aPSI-BLAST used E values to rank the hit proteins. bMAMMOTH and CE utilized Z scores to rank hit proteins. |
||||
|
Tung et al. Genome Biology 2007 8:R31 doi:10.1186/gb-2007-8-3-r31 |
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