Open Access Software

GOTax: investigating biological processes and biochemical activities along the taxonomic tree

Andreas Schlicker*, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer and Francisco S Domingues

Author Affiliations

Department of Computational Biology and Applied Algorithmics, Max-Planck-Institute for Informatics, Stuhlsatzenhausweg, 66123 Saarbrücken, Germany

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Genome Biology 2007, 8:R33  doi:10.1186/gb-2007-8-3-r33

Published: 8 March 2007

Additional files

Additional data file 1:

Figure S1: Description of the query language used by the GOTax platform and an analysis of the rfunSim score

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Open Data

Additional data file 2:

Table columns are, in the following order: numbering, GO term accession number, GO term name, GO term type.

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Open Data

Additional data file 3:

Table columns are, in the following order: numbering, UniProt accession number, UniProt name, database.

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Open Data

Additional data file 4:

Table columns are, in the following order: numbering, Pfam accession number, domain name. Set 1 corresponds to yeast Pfams and set 2 to human Pfams.

Format: CSV Size: 75KB Download file

Open Data

Additional data file 5:

Table columns are, in the following order: numbering, Pfam accession number, domain name. Set 1 corresponds to virus Pfams and set 2 to human Pfams.

Format: CSV Size: 73KB Download file

Open Data

Additional data file 6:

Table columns are, in the following order: numbering, Pfam accession number, domain name. Set 1 corresponds to Pfams from Viridiplantae and set 2 to fungal Pfams.

Format: CSV Size: 70KB Download file

Open Data

Additional data file 7:

Table columns are, in the following order: numbering, GO term accession number, GO term name, GO term type, simRel, matched GO term accession number, matched GO term name, semantic similarity according to Lin, matched GO term accession number, matched GO term name.

Format: CSV Size: 62KB Download file

Open Data

Additional data file 8:

Table columns are, in the following order: numbering, GO term accession number, GO term name, GO term type, simRel, matched GO term accession number, matched GO term name, semantic similarity according to Lin, matched GO term accession number, matched GO term name.

Format: CSV Size: 118KB Download file

Open Data

Additional data file 9:

Complete FSST output for the comparison of proteins from Arabidopsis thaliana (NCBI Taxonomy id: 3702) and S. cerevisiae (NCBI Taxonomy id: 4932)

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Open Data