Hawkeye: an interactive visual analytics tool for genome assemblies
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* Corresponding author: Michael C Schatz mschatz@umiacs.umd.edu
Genome Biology 2007, 8:R34 doi:10.1186/gb-2007-8-3-r34
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BioMed Central: 6 citations
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Research
Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths Jacob Enk, Alison Devault, Regis Debruyne, Christine E King, Todd Treangen, Dennis O'Rourke, Steven L Salzberg, Daniel Fisher, Ross MacPhee, Hendrik Poinar Genome Biology 2011, 12:R51 (31 May 2011) A surprising mtDNA phylogeny suggests that North American woolly mammoths bred with the distinct Columbian mammoth species
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Research article
Chase A Miller, Katherine M Buckley, Rebecca L Easley, L Courtney Smith BMC Genomics 2010, 11:575 (18 October 2010) |
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Poster presentation
Tobias Rausch, Anne-Katrin Emde, Knut Reinert BMC Bioinformatics 2008, 9(Suppl 10):P4 (30 October 2008) |
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Methodology article
A visual analytics approach for understanding biclustering results from microarray data Rodrigo Santamaría, Roberto Therón, Luis Quintales BMC Bioinformatics 2008, 9:247 (27 May 2008) |
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Research article
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A Steven L Salzberg, Daniel D Sommer, Michael C Schatz, Adam M Phillippy, Pablo D Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur L Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna, Gopaljee Jha, Alok Pandey, Prabhu B Patil, Hiromichi Ishihara, Damien F Meyer, Boris Szurek, Valerie Verdier, Ralf Koebnik, J Maxwell Dow, Robert P Ryan, Hisae Hirata, Shinji Tsuyumu, Sang Won Lee, Pamela C Ronald, Ramesh V Sonti, Marie-Anne Van Sluys, Jan E Leach, Frank F White, Adam J Bogdanove et al. BMC Genomics 2008, 9:204 (1 May 2008) |
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Software
Genome assembly forensics: finding the elusive mis-assembly Adam M Phillippy, Michael C Schatz, Mihai Pop Genome Biology 2008, 9:R55 (14 March 2008) A collection of software tools is combined for the first time in an automated pipeline for detecting large-scale genome assembly errors and for validating genome assemblies. |