Mis-assembly detection in Scaffold View. Continuous coloring in the Scaffold View displaying a region of Xanthamonas oryzæ. Slightly compressed mate-pairs are colored increasingly bright yellow as they deviate from the mean. Slightly expanded pairs are also visible in blue, but are uncorrelated and most likely caused by inexact library sizing.
Schatz et al. Genome Biology 2007 8:R34 doi:10.1186/gb-2007-8-3-r34