Research
Developmental stage related patterns of codon usage and genomic GC content: searching for evolutionary fingerprints with models of stem cell differentiation
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* Corresponding author: Hongkui Deng hongkui_deng@pku.edu.cn
1 College of Life Sciences, Shanghai Jiao Tong University, Shanghai, 200240, PR China
2 Center for Bioinformatics, College of Life Sciences, National Laboratory of Protein Engineering and Plant Genetics Engineering, Peking University, Beijing, 100871, PR China
3 Department of Cell Biology and Genetics, College of Life Sciences, Peking University, Beijing, 100871, PR China
Genome Biology 2007, 8:R35 doi:10.1186/gb-2007-8-3-r35
Published: 12 March 2007Additional files
Additional data file 1:
Comparisons of GC3 and GCg between developmental-pivotal genes and developmental-specific genes
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Additional data file 2:
Levels of gene expression are correlated with codon usage, recombination rate, gene length and nucleotide composition
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Additional data file 3:
Fold changes of gene expression are correlated with codon usage, recombination rate and gene length
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Additional data file 4:
GC3 and GCg of developmental-pivotal genes, developmental-specific genes and both together in each differentiation pair
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Additional data file 5:
Comparisons of substitution rates between developmental-pivotal genes and developmental-specific genes
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