Table 3

Assembly statistics

Reference sequence CSAV 2.0 (this work)

Original WGS assembly

Non-redundant 1.0


Total length (Mb)

174

402

157

Scaffold N50 (kb)

1,779

496

988

Contig N50 (kb)

116

17

47

Number of scaffolds

374

33,623

446

Number of scaffolds >3 kb

374

4,123

444

Number of contigs

4,620

66,800

8,183

Gap bases in scaffolds

1.7%

5.6%

4.3%


kb, kilobases; Mb, megabases; WGS, whole-genome shotgun.

Small et al. Genome Biology 2007 8:R41   doi:10.1186/gb-2007-8-3-r41

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