Table 4 |
||||
|
Mobile element content |
||||
|
Total elements (haplome assembly) |
Present in both haplomes ('ancestral') |
Haplome-specific instances (insertions) |
Ancestral/haplome specific |
|
|
|
||||
|
DNA transposons |
||||
|
Charlie |
6,286 |
4,484 |
684 |
6.6 |
|
En-Spm |
101 |
51 |
10 |
5.1 |
|
Harbinger |
403 |
184 |
61 |
3.0 |
|
hAT |
4,111 |
1,783 |
872 |
2.0 |
|
Other |
16,679 |
11,667 |
1,743 |
6.7 |
|
P |
154 |
74 |
31 |
2.4 |
|
PiggyBac |
22 |
14 |
5 |
2.8 |
|
Pogo |
20 |
3 |
5 |
0.6 |
|
Tc2 |
746 |
517 |
68 |
7.6 |
|
Tip100 |
27 |
5 |
15 |
0.3 |
|
Retroelements |
||||
|
SINEs |
131,215 |
98,841 |
9,524 |
10.4 |
|
LINEs |
||||
|
L1 |
4,468 |
2,203 |
552 |
4.0 |
|
L2 |
18,820 |
13,286 |
1,627 |
8.2 |
|
LOA |
2,485 |
1,695 |
215 |
7.9 |
|
R2 |
526 |
298 |
87 |
3.4 |
|
RTE |
162 |
109 |
22 |
5.0 |
|
LTR |
||||
|
Gypsy |
2,405 |
1,106 |
483 |
2.3 |
|
Pao |
3,123 |
1,435 |
653 |
2.2 |
|
RC/Helitron |
172 |
64 |
20 |
3.2 |
|
Unclassified |
48,515 |
32,113 |
4,906 |
6.5 |
|
Satellites |
8,301 |
5,417 |
738 |
7.3 |
|
Total |
248,741 |
175,349 |
22,321 |
7.9 |
|
|
||||
|
LINE, long interspersed element; LTR, long terminal repeat element; SINE, short interspersed element. |
||||
|
Small et al. Genome Biology 2007 8:R41 doi:10.1186/gb-2007-8-3-r41 |
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