Table 4

Mobile element content

Total elements (haplome assembly)

Present in both haplomes ('ancestral')

Haplome-specific instances (insertions)

Ancestral/haplome specific


DNA transposons

Charlie

6,286

4,484

684

6.6

En-Spm

101

51

10

5.1

Harbinger

403

184

61

3.0

hAT

4,111

1,783

872

2.0

Other

16,679

11,667

1,743

6.7

P

154

74

31

2.4

PiggyBac

22

14

5

2.8

Pogo

20

3

5

0.6

Tc2

746

517

68

7.6

Tip100

27

5

15

0.3

Retroelements

SINEs

131,215

98,841

9,524

10.4

LINEs

L1

4,468

2,203

552

4.0

L2

18,820

13,286

1,627

8.2

LOA

2,485

1,695

215

7.9

R2

526

298

87

3.4

RTE

162

109

22

5.0

LTR

Gypsy

2,405

1,106

483

2.3

Pao

3,123

1,435

653

2.2

RC/Helitron

172

64

20

3.2

Unclassified

48,515

32,113

4,906

6.5

Satellites

8,301

5,417

738

7.3

Total

248,741

175,349

22,321

7.9


LINE, long interspersed element; LTR, long terminal repeat element; SINE, short interspersed element.

Small et al. Genome Biology 2007 8:R41   doi:10.1186/gb-2007-8-3-r41

Open Data