Genome Biology

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Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

Helder I Nakaya, Paulo P Amaral, Rodrigo Louro, André Lopes, Angela A Fachel, Yuri B Moreira, Tarik A El-Jundi, Aline M da Silva, Eduardo M Reis and Sergio Verjovski-Almeida*

Genome Biology 2007, 8:R43 doi:10.1186/gb-2007-8-3-r43

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Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer

Ana C Tahira, Márcia S Kubrusly, Michele F Faria, Bianca Dazzani, Rogério S Fonseca, Vinicius Maracaja-Coutinho, Sergio Verjovski-Almeida, Marcel CC Machado, Eduardo M Reis Molecular Cancer 2011, 10:141 (13 November 2011)

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The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

Philipp Kapranov, Georges St Laurent, Tal Raz, Fatih Ozsolak, C Patrick Reynolds, Poul HB Sorensen, Gregory Reaman, Patrice Milos, Robert J Arceci, John F Thompson, Timothy J Triche BMC Biology 2010, 8:149 (21 December 2010)

There is considerable debate over the prevalence and importance of non-coding, or 'dark matter', RNAs. Kapranov and colleagues contribute with a single-molecule sequencing study, agreeing with previous suggestions that non-coding transcripts are more abundant in the cell than protein-coding RNAs.

Research article   Open Access

Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts

Mariana O Baratti, Yuri B Moreira, Fabiola Traina, Fernando F Costa, Sergio Verjovski-Almeida, Sara T Olalla-Saad BMC Medical Genomics 2010, 3:30 (15 July 2010)

Research article   Open Access

Regulation of expression of two LY-6 family genes by intron retention and transcription induced chimerism

Vincenzo Calvanese, Meera Mallya, R Duncan Campbell, Begoña Aguado BMC Molecular Biology 2008, 9:81 (25 September 2008)

Research article   Open Access

Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

Yi-Fei Huang, Deng-Ke Niu BMC Evolutionary Biology 2008, 8:154 (20 May 2008)