Research
Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription
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* Corresponding author: Sergio Verjovski-Almeida verjo@iq.usp.br
Departamento de Bioquimica, Instituto de Quimica, Universidade de São Paulo, 05508-900 São Paulo, SP, Brazil
Genome Biology 2007, 8:R43 doi:10.1186/gb-2007-8-3-r43
Published: 26 March 2007Additional files
Additional data file 1:
Sense/antisense transcript pairs with overlapping exons and with no exon overlap (wholly intronic) identified in the RefSeq and mRNA data from GenBank
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Additional data file 2:
Abundance of wholly intronic noncoding transcription in RefSeq genes
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Additional data file 3:
Distribution of BLAST bit-score for the second best hit of the 60-mer oligonucleotide probes from the microarray
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Additional data file 4:
The table shows the exact p values for all significantly enriched GO categories for each of the three tissues studied
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Additional data file 5:
probes representing antisense TIN RNAs from 123 Gene IDs of genes related to 'Regulation of transcription'
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Additional data file 6:
Gene ontology analyses with the most highly expressed protein-coding transcripts in three different human tissues
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Additional data file 7:
All exonic protein-coding and intronic non-coding RNAs up-regulated upon α-amanitin treatment are also shown
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Additional data file 8:
Tissue signatures of 431 antisense PIN RNAs
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Additional data file 9:
Tissue signatures of 419 antisense TIN RNAs
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Additional data file 10:
Tissue signatures of 567 sense TIN RNAs
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Additional data file 11:
Comparison of tissue signatures between antisense PIN RNAs and exons of protein-coding genes
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Additional data file 12:
Comparison of tissue signatures between TIN RNAs and exons of protein-coding genes
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Additional data file 13:
Formatted for UCSC browser track, hg17 assembly version of May 2004
Format: PSL Size: 5MB Download file
Additional data file 14:
Formatted for UCSC browser track, hg17 assembly version of May 2004
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Additional data file 15:
Design of the 44 K platform
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Additional data file 16:
Formatted for UCSC browser track, hg17 assembly version of May 2004
Format: PSL Size: 3MB Download file