Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

Additional data file 1:

Sense/antisense transcript pairs with overlapping exons and with no exon overlap (wholly intronic) identified in the RefSeq and mRNA data from GenBank

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Additional data file 2:

Abundance of wholly intronic noncoding transcription in RefSeq genes

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Additional data file 3:

Distribution of BLAST bit-score for the second best hit of the 60-mer oligonucleotide probes from the microarray

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Additional data file 4:

The table shows the exact p values for all significantly enriched GO categories for each of the three tissues studied

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Additional data file 5:

probes representing antisense TIN RNAs from 123 Gene IDs of genes related to 'Regulation of transcription'

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Additional data file 6:

Gene ontology analyses with the most highly expressed protein-coding transcripts in three different human tissues

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Additional data file 7:

All exonic protein-coding and intronic non-coding RNAs up-regulated upon α-amanitin treatment are also shown

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Additional data file 8:

Tissue signatures of 431 antisense PIN RNAs

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Additional data file 9:

Tissue signatures of 419 antisense TIN RNAs

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Additional data file 10:

Tissue signatures of 567 sense TIN RNAs

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Additional data file 11:

Comparison of tissue signatures between antisense PIN RNAs and exons of protein-coding genes

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Additional data file 12:

Comparison of tissue signatures between TIN RNAs and exons of protein-coding genes

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Formatted for UCSC browser track, hg17 assembly version of May 2004

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Formatted for UCSC browser track, hg17 assembly version of May 2004

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Design of the 44 K platform

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Additional data file 16:

Formatted for UCSC browser track, hg17 assembly version of May 2004

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