Table 2 |
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|
Classification of GenBank ESTs with respect to their genome mapping coordinates in relation to the set of non-redundant spliced RefSeq sequences |
||||
| EST clusters with overlap to exons of RefSeq genes* |
EST clusters wholly intronic to RefSeq genes |
EST clusters mapped outside of RefSeq genes |
Total |
|
|
|
||||
| Spliced EST contigs |
16,241 |
8,013 |
10,144 |
34,398 |
| Number of exons of spliced EST contigs (median) |
10 |
2 |
3 |
|
| Total number of spliced ESTs in contigs |
3,616,644 |
162,841 |
241,049 |
4,020,534 |
| Number of spliced ESTs per contig (median) |
91 |
3 |
4 |
|
| Unspliced EST contigs |
4,030 |
55,139 |
29,198 |
88,367 |
| Total number of unspliced ESTs in contigs |
56,752 |
190,583 |
140,091 |
387,426 |
| Number of unspliced ESTs per contig (median) |
4 |
2 |
2 |
|
| Spliced EST singlets |
1,053 |
6,205 |
6,631 |
13,889 |
| Unspliced EST singlets |
3,539 |
121,091 |
71,662 |
196,292 |
| Total non-redundant EST clusters (contigs + singlets) |
24,863 |
190,448 |
117,635 |
332,946 |
| Total ESTs |
3,677,988 |
480,720 |
459,433 |
4,618,141 |
|
|
||||
|
*The reference dataset comprises 15,783 spliced non-redundant RefSeq units plus the evidence of additional splice variants obtained for each transcriptional unit from all mRNA sequences mapping to the same locus. |
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|
Nakaya et al. Genome Biology 2007 8:R43 doi:10.1186/gb-2007-8-3-r43 |
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