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Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships

Alan R Dabney and John D Storey*

Genome Biology 2007, 8:R44 doi:10.1186/gb-2007-8-3-r44

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Research article   Open Access

Error, reproducibility and sensitivity: a pipeline for data processing of Agilent oligonucleotide expression arrays

Benjamin Chain, Helen Bowen, John Hammond, Wilfried Posch, Jane Rasaiyaah, Jhen Tsang, Mahdad Noursadeghi BMC Bioinformatics 2010, 11:344 (24 June 2010)

Abstract | Full text | PDF | PubMed

Methodology article   Open Access

MAID : An effect size based model for microarray data integration across laboratories and platforms

Ivan Borozan, Limin Chen, Bryan Paeper, Jenny E Heathcote, Aled M Edwards, Michael Katze, Zhaolei Zhang, Ian D McGilvray BMC Bioinformatics 2008, 9:305 (10 July 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Mixture modeling of transcript abundance classes in natural populations

Wen-Ping Hsieh, Gisele Passador-Gurgel, Eric A Stone, Greg Gibson Genome Biology 2007, 8:R98 (4 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Editor’s summary

Expression profiling of Drosophila melanogaster adult female heads for 108 nearly isogenic lines from two different populations, and of CEPH lymphoblastoid lines, shows that differential expression of transcripts among individuals is due to a complex interplay of cis- and trans-acting factors.

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