Genome Biology

official impact factor 6.89

Open Access

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Jan Gorodkin, Susanna Cirera, Jakob Hedegaard, Michael J Gilchrist, Frank Panitz, Claus Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J Nielsen, Jakob H Havgaard, Carina Rosenkilde, Jun Wang, Heng Li, Ruiqiang Li, Bin Liu, Songnian Hu, Wei Dong, Wei Li, Jun Yu, Jian Wang, Hans-Henrik Stærfeldt, Rasmus Wernersson, Lone B Madsen, Bo Thomsen, Henrik Hornshøj, Zhan Bujie, Xuegang Wang, Xuefei Wang, Lars Bolund, Søren Brunak, Huanming Yang, Christian Bendixen and Merete Fredholm*

  • * Corresponding author: Merete Fredholm mf@kvl.dk

Genome Biology 2007, 8:R45 doi:10.1186/gb-2007-8-4-r45

Accesses  

  • Last 30 days: 79 accesses
  • Last year: 1082 accesses
  • All time: 6403 accesses

Cited by

BioMed Central: 15 citations

Research   Open Access

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Shaolin Wang, Eric Peatman, Jason Abernathy, Geoff Waldbieser, Erika Lindquist, Paul Richardson, Susan Lucas, Mei Wang, Ping Li, Jyothi Thimmapuram, Lei Liu, Deepika Vullaganti, Huseyin Kucuktas, Christopher Murdock, Brian C Small, Melanie Wilson, Hong Liu, Yanliang Jiang, Yoona Lee, Fei Chen, Jianguo Lu, Wenqi Wang, Peng Xu, Benjaporn Somridhivej, Puttharat Baoprasertkul, Jonas Quilang, Zhenxia Sha, Baolong Bao, Yaping Wang, Qun Wang et al. Genome Biology 2010, 11:R8 (22 January 2010)

Twelve cDNA libraries from two species of catfish have been sequenced, resulting in the generation of nearly 500,000 ESTs.

Research article   Open Access Highly Accessed

454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides

Mika Zagrobelny, Karsten Scheibye-Alsing, Niels Jensen, Birger Møller, Jan Gorodkin, Søren Bak BMC Genomics 2009, 10:574 (2 December 2009)

Research article   Open Access Highly Accessed

Association between SNPs within candidate genes and compounds related to boar taint and reproduction

Maren Moe, Sigbjørn Lien, Torunn Aasmundstad, Theo HE Meuwissen, Marianne HS Hansen, Christian Bendixen, Eli Grindflek BMC Genetics 2009, 10:32 (5 July 2009)

Research article   Open Access

A robust linkage map of the porcine autosomes based on gene-associated SNPs

Rikke KK Vingborg, Vivi R Gregersen, Bujie Zhan, Frank Panitz, Anette Høj, Kirsten K Sørensen, Lone B Madsen, Knud Larsen, Henrik Hornshøj, Xuefei Wang, Christian Bendixen BMC Genomics 2009, 10:134 (27 March 2009)

Research article   Open Access Highly Accessed

Cloning, characterization and expression analysis of porcine microRNAs

Alavala Reddy, Yun Zheng, Guru Jagadeeswaran, Simone L Macmil, Wiley B Graham, Bruce A Roe, Udaya Desilva, Weixiong Zhang, Ramanjulu Sunkar BMC Genomics 2009, 10:65 (5 February 2009)

Research article   Open Access Highly Accessed

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies

Henrik Hornshøj, Emøke Bendixen, Lene N Conley, Pernille K Andersen, Jakob Hedegaard, Frank Panitz, Christian Bendixen BMC Genomics 2009, 10:30 (19 January 2009)

Research article   Open Access

Gene expression profiles in liver of pigs with extreme high and low levels of androstenone

Maren Moe, Sigbjørn Lien, Christian Bendixen, Jakob Hedegaard, Henrik Hornshøj, Ingunn Berget, Theo HE Meuwissen, Eli Grindflek BMC Veterinary Research 2008, 4:29 (6 August 2008)

Levels of the steroid androstenone, a principal component of boar taint, are influenced by genes expressed in the male pig liver regulating phase I oxidation metabolism, phase II conjugation metabolism and steroid availability.

Research article   Open Access

Phenotypic and genetic characterization of a novel phenotype in pigs characterized by juvenile hairlessness and age dependent emphysema

Camilla S Bruun, Claus B Jørgensen, Lene Bay, Susanna Cirera, Henrik E Jensen, Páll S Leifsson, Jens Nielsen, Knud Christensen, Merete Fredholm BMC Genomics 2008, 9:283 (12 June 2008)

Research article   Open Access Highly Accessed

Characterization of a newly developed chicken 44K Agilent microarray

Xianyao Li, Hsin-I Chiang, James Zhu, Scot E Dowd, Huaijun Zhou BMC Genomics 2008, 9:60 (31 January 2008)

Research article   Open Access

Gene expression profiles in testis of pigs with extreme high and low levels of androstenone

Maren Moe, Theo Meuwissen, Sigbjørn Lien, Christian Bendixen, Xuefei Wang, Lene Conley, Ingunn Berget, Håvard Tajet, Eli Grindflek BMC Genomics 2007, 8:405 (7 November 2007)

Research article   Open Access

EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues

Karsten Scheibye-Alsing, Susanna Cirera, Michael J Gilchrist, Merete Fredholm, Jan Gorodkin BMC Genomics 2007, 8:367 (11 October 2007)

Research article   Open Access

Molecular characterization and temporal expression profiling of presenilins in the developing porcine brain

Lone B Madsen, Bo Thomsen, Knud Larsen, Christian Bendixen, Ida E Holm, Merete Fredholm, Arne L Jørgensen, Anders L Nielsen BMC Neuroscience 2007, 8:72 (13 September 2007)

Research article   Open Access Highly Accessed

Detection of RNA structures in porcine EST data and related mammals

Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin BMC Genomics 2007, 8:316 (10 September 2007)

Methodology article   Open Access Highly Accessed

Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR

Ann-Britt Nygard, Claus B Jørgensen, Susanna Cirera, Merete Fredholm BMC Molecular Biology 2007, 8:67 (15 August 2007)

Research   Open Access

Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays

Jakob Hedegaard, Kerstin Skovgaard, Shila Mortensen, Peter Sørensen, Tim K Jensen, Henrik Hornshøj, Christian Bendixen, Peter MH Heegaard Acta Veterinaria Scandinavica 2007, 49:11 (27 April 2007)