Open Access Research

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

Jan Gorodkin1, Susanna Cirera1, Jakob Hedegaard2, Michael J Gilchrist3, Frank Panitz2, Claus Jørgensen1, Karsten Scheibye-Knudsen1, Troels Arvin1, Steen Lumholdt1, Milena Sawera1, Trine Green1, Bente J Nielsen1, Jakob H Havgaard1, Carina Rosenkilde1, Jun Wang456, Heng Li45, Ruiqiang Li46, Bin Liu4, Songnian Hu4, Wei Dong4, Wei Li4, Jun Yu4, Jian Wang4, Hans-Henrik Stærfeldt7, Rasmus Wernersson7, Lone B Madsen2, Bo Thomsen2, Henrik Hornshøj2, Zhan Bujie2, Xuegang Wang2, Xuefei Wang2, Lars Bolund45, Søren Brunak7, Huanming Yang4, Christian Bendixen2 and Merete Fredholm1*

  • * Corresponding author: Merete Fredholm mf@kvl.dk

Author Affiliations

1 Division of Genetics and Bioinformatics, IBHV, Grønnegärdsvej 3, The Royal Veterinary and Agricultural University, DK-1870 Frederiksberg C, Denmark

2 Department of Genetics and Biotechnology, Danish Institute of Agricultural Sciences, Blichers Alle, DK-8830 Tjele, Denmark

3 The Wellcome Trust/Cancer Research UK Gurdon Institute, Cambridge, CB2 1QN, UK

4 Beijing Genomics Institute, The Airport Industrial Road, Beijing 101300, PR China

5 Institute of Human Genetics, University of Aarhus, Nordre Ringgade 1, DK-8000 Aarhus C, Denmark

6 Department of Biochemistry and Molecular Biology, University of Southern Denmark, Campus Vej 55, DK-5230 Odense M, Denmark

7 Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, DK-2800 Lyngby, Denmark

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Genome Biology 2007, 8:R45  doi:10.1186/gb-2007-8-4-r45

Published: 2 April 2007

Additional files

Additional data file 1:

Additional data file 1 contains figures related to the expression analysis, cleaning and correlations. Furthermore, Additional data file 1 contains tables of noncoding RNA, housekeeping genes and the top 50 cDNA-library-specific genes. Finally, it contains a table of the NCBI trace archive accession numbers.

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Open Data

Additional data file 2:

Additional data file 2 contains pie charts of how the expression for each cDNA library is distributed in the main level of GO category 'molecular function'.

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Open Data

Additional data file 3:

Additional data file 3 contains pie charts of how the expression for each cDNA library is distributed in the GO category of 'cellular component'.

Format: PDF Size: 184KB Download file

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Open Data

Additional data file 4:

Additional data file 4 contains pie charts of how the expression for each cDNA library is distributed in the GO category of 'biological process'.

Format: PDF Size: 199KB Download file

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Open Data