Research
A TATA binding protein regulatory network that governs transcription complex assembly
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* Corresponding author: B Franklin Pugh bfp2@psu.edu
1 Center for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
2 Department of Biology, Washington University, Saint Louis, MO 63130, USA
Genome Biology 2007, 8:R46 doi:10.1186/gb-2007-8-4-r46
Published: 2 April 2007Additional files
Additional data file 1:
Supporting text and figures.
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Additional data file 2:
Log2 ratios of fold changes in gene expression for the data shown in Figure 3 (63 × 6,227 expression ratios), the standard deviation of each cluster, and ChIP-chip log2 ratios of occupancy relative to wild-type TBP for experiments that were not published elsewhere (that is, Figure 4c).
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Additional data file 3:
Flux constant values for each cluster and the products of the simulation.
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Additional data file 4:
P values for overlapping relationships between gene clusters described here and a large amount of published genomic data.
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